Wall clock time and date at job start Mon Mar 30 2020 02:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99969 * 2 1 4 4 C 1.50706 * 109.46766 * 66.04937 * 3 2 1 5 5 H 1.07994 * 120.00134 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99505 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00134 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99783 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46825 * 90.00333 * 8 6 4 10 10 H 1.48497 * 109.47124 * 330.00331 * 8 6 4 11 11 H 1.48497 * 109.47017 * 210.00239 * 8 6 4 12 12 C 1.46905 * 110.99789 * 236.05000 * 2 1 3 13 13 H 1.08998 * 110.01624 * 65.54341 * 12 2 1 14 14 C 1.54264 * 110.02969 * 304.15535 * 12 2 1 15 15 C 1.54967 * 104.16120 * 217.13730 * 14 12 2 16 16 C 1.54892 * 102.77457 * 37.88770 * 15 14 12 17 17 H 1.09006 * 110.48186 * 80.76437 * 16 15 14 18 18 C 1.52999 * 110.48734 * 203.40487 * 16 15 14 19 19 N 1.46902 * 109.47287 * 289.78023 * 18 16 15 20 20 C 1.53872 * 110.03159 * 186.94283 * 12 2 1 21 21 H 1.08996 * 109.47309 * 56.43366 * 1 2 3 22 22 H 1.09001 * 109.47005 * 176.44064 * 1 2 3 23 23 H 1.09001 * 109.46506 * 296.43438 * 1 2 3 24 24 H 1.08997 * 109.47389 * 306.04802 * 3 2 1 25 25 H 1.09002 * 109.46923 * 186.04874 * 3 2 1 26 26 H 0.96994 * 120.00343 * 359.97438 * 7 6 4 27 27 H 1.09001 * 110.48915 * 335.78418 * 14 12 2 28 28 H 1.08997 * 110.48829 * 98.42906 * 14 12 2 29 29 H 1.09004 * 110.72052 * 279.57516 * 15 14 12 30 30 H 1.08995 * 110.92366 * 156.29493 * 15 14 12 31 31 H 1.09003 * 109.46967 * 49.77886 * 18 16 15 32 32 H 1.08997 * 109.47185 * 169.77373 * 18 16 15 33 33 H 1.00900 * 111.00245 * 56.03717 * 19 18 16 34 34 H 1.00899 * 110.99924 * 179.97438 * 19 18 16 35 35 H 1.09002 * 110.03065 * 238.57077 * 20 12 2 36 36 H 1.09000 * 110.03025 * 359.97438 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2986 5 1 1.0740 1.5114 2.0485 6 6 2.0277 3.3491 1.5290 7 7 2.7129 4.0015 0.6154 8 14 1.5828 4.1868 3.1383 9 1 2.6589 3.9498 4.1337 10 1 0.3044 3.6301 3.6492 11 1 1.4314 5.6465 2.9111 12 6 1.9955 -0.7659 -1.1377 13 1 1.7333 -0.2720 -2.0733 14 6 1.4251 -2.1992 -1.1189 15 6 2.6041 -3.0827 -1.5995 16 6 3.8303 -2.4080 -0.9359 17 1 3.9210 -2.7203 0.1045 18 6 5.1080 -2.7400 -1.7094 19 7 5.4441 -4.1567 -1.5148 20 6 3.5241 -0.8985 -1.0217 21 1 -0.3634 0.5682 -0.8563 22 1 -0.3633 -1.0257 -0.0638 23 1 -0.3632 0.4575 0.9203 24 1 1.5611 1.9274 -0.8309 25 1 3.0798 1.3444 -0.1083 26 1 2.9436 3.5667 -0.2203 27 1 1.1269 -2.4779 -0.1083 28 1 0.5810 -2.2828 -1.8035 29 1 2.6889 -3.0552 -2.6858 30 1 2.4904 -4.1082 -1.2482 31 1 4.9510 -2.5463 -2.7706 32 1 5.9257 -2.1190 -1.3439 33 1 4.6754 -4.7514 -1.7862 34 1 6.2847 -4.4012 -2.0164 35 1 4.0038 -0.4696 -1.9015 36 1 3.8753 -0.3942 -0.1215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724051363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:22 Heat of formation + Delta-G solvation = -39.162089 kcal Electronic energy + Delta-G solvation = -14626.580426 eV Core-core repulsion = 12336.569305 eV Total energy + Delta-G solvation = -2290.011121 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.25626 -37.40207 -35.19148 -33.96978 -30.41292 -29.14383 -28.47364 -25.94189 -24.51838 -23.35651 -21.03742 -20.34490 -18.89355 -17.38664 -16.90185 -16.29225 -16.16817 -15.65100 -15.17323 -14.91526 -14.51977 -14.16706 -13.91448 -13.61650 -13.41390 -13.01257 -12.73323 -12.50334 -12.18658 -11.93678 -11.81626 -11.78047 -11.67570 -11.51495 -11.46534 -10.75875 -10.57225 -9.60400 -9.11823 -8.69857 -6.39911 1.52014 1.61583 1.79637 2.54804 3.11978 3.20425 3.47788 3.63823 3.80201 4.00755 4.26510 4.37622 4.44978 4.48416 4.51358 4.57197 4.68874 4.72582 4.79250 4.86940 4.92796 5.01058 5.03888 5.07658 5.13381 5.23564 5.33828 5.49283 5.81559 5.98586 6.24196 6.39020 6.43094 6.64389 6.66682 7.40824 8.68862 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042217 B = 0.007006 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.084764 B = 3995.869408 C = 4358.277708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.537 5.537 3 C 0.192 3.808 4 C -0.599 4.599 5 H 0.054 0.946 6 C -0.039 4.039 7 N -0.939 5.939 8 Si 1.125 2.875 9 H -0.273 1.273 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.071 3.929 13 H 0.018 0.982 14 C -0.108 4.108 15 C -0.106 4.106 16 C -0.079 4.079 17 H 0.068 0.932 18 C 0.074 3.926 19 N -0.855 5.855 20 C -0.110 4.110 21 H 0.003 0.997 22 H 0.087 0.913 23 H 0.053 0.947 24 H -0.052 1.052 25 H 0.007 0.993 26 H 0.252 0.748 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.348 0.652 34 H 0.350 0.650 35 H 0.058 0.942 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 -15.304 -5.560 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.261 5.261 3 C 0.066 3.934 4 C -0.637 4.637 5 H 0.072 0.928 6 C -0.236 4.236 7 N -0.576 5.576 8 Si 0.945 3.055 9 H -0.198 1.198 10 H -0.194 1.194 11 H -0.208 1.208 12 C -0.038 4.038 13 H 0.036 0.964 14 C -0.146 4.146 15 C -0.143 4.143 16 C -0.098 4.098 17 H 0.086 0.914 18 C -0.056 4.056 19 N -0.387 5.387 20 C -0.149 4.149 21 H 0.022 0.978 22 H 0.105 0.895 23 H 0.072 0.928 24 H -0.034 1.034 25 H 0.025 0.975 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.077 0.923 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.634 -13.944 -3.535 14.399 hybrid contribution -0.371 -0.469 -2.822 2.885 sum 0.263 -14.413 -6.357 15.755 Atomic orbital electron populations 1.22212 0.87649 1.01166 0.99683 1.62176 1.08025 1.14296 1.41628 1.19577 0.93879 0.85212 0.94782 1.22333 1.38288 1.00144 1.02920 0.92812 1.27459 0.93604 0.95854 1.06637 1.70899 1.38500 1.40213 1.08028 0.82842 0.77037 0.74963 0.70626 1.19814 1.19389 1.20751 1.22416 0.95384 0.95358 0.90600 0.96439 1.22414 0.98358 0.91930 1.01897 1.22500 0.92712 0.98966 1.00149 1.21858 0.94943 0.92966 1.00010 0.91390 1.21705 0.96494 0.90124 0.97322 1.58649 1.09825 1.03539 1.66645 1.22173 0.94609 0.97439 1.00672 0.97815 0.89491 0.92781 1.03440 0.97542 0.93898 0.91028 0.90672 0.90664 0.89392 0.94622 0.92213 0.83851 0.83667 0.92307 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.10 127.69 1.16 2.82 16 2 N -0.54 -24.31 4.52 -897.33 -4.05 -28.37 16 3 C 0.19 10.63 3.80 85.56 0.33 10.95 16 4 C -0.60 -35.49 8.56 25.60 0.22 -35.27 16 5 H 0.05 3.16 7.10 -2.91 -0.02 3.14 16 6 C -0.04 -2.30 5.46 84.66 0.46 -1.84 16 7 N -0.94 -59.61 13.65 21.45 0.29 -59.32 16 8 Si 1.12 51.72 29.90 68.60 2.05 53.77 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 C 0.07 2.61 2.67 45.64 0.12 2.73 16 13 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 14 C -0.11 -2.97 5.05 31.70 0.16 -2.81 16 15 C -0.11 -2.32 5.69 31.91 0.18 -2.13 16 16 C -0.08 -2.12 3.09 -9.72 -0.03 -2.15 16 17 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 18 C 0.07 1.67 6.12 86.30 0.53 2.20 16 19 N -0.86 -15.77 9.62 -186.72 -1.80 -17.57 16 20 C -0.11 -3.88 5.39 31.32 0.17 -3.71 16 21 H 0.00 0.14 8.10 -2.39 -0.02 0.12 16 22 H 0.09 2.81 6.43 -2.39 -0.02 2.80 16 23 H 0.05 2.35 6.96 -2.39 -0.02 2.33 16 24 H -0.05 -3.10 7.96 -2.39 -0.02 -3.12 16 25 H 0.01 0.39 6.17 -2.39 -0.01 0.37 16 26 H 0.25 16.29 7.22 -92.71 -0.67 15.62 16 27 H 0.07 2.08 7.51 -2.39 -0.02 2.06 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 1.45 7.97 -2.39 -0.02 1.43 16 30 H 0.09 1.58 8.04 -2.39 -0.02 1.56 16 31 H 0.04 0.73 8.02 -2.39 -0.02 0.71 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.35 5.30 8.28 -89.69 -0.74 4.55 16 34 H 0.35 5.05 9.08 -89.69 -0.81 4.24 16 35 H 0.06 1.97 7.84 -2.39 -0.02 1.95 16 36 H 0.04 1.90 6.67 -2.39 -0.02 1.88 16 Total: -1.00 -68.40 279.85 -0.60 -69.01 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -0.40 Total: 11.68 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 3.30 Total: -29.20 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -5.56 Total: -105.26 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.05 Total: 53.77 kcal Total: -68.40 -0.60 -69.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724051363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.846 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds