Wall clock time and date at job start Mon Mar 30 2020 02:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99854 * 2 1 4 4 C 1.50697 * 109.47278 * 293.95534 * 3 2 1 5 5 H 1.08004 * 119.99978 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00152 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00233 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00311 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46778 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47359 * 119.99370 * 8 6 4 11 11 H 1.48493 * 109.47316 * 239.99937 * 8 6 4 12 12 C 1.46903 * 110.99990 * 123.95703 * 2 1 3 13 13 H 1.09001 * 110.53514 * 297.20281 * 12 2 1 14 14 C 1.54266 * 110.48612 * 174.59342 * 12 2 1 15 15 C 1.53872 * 106.59640 * 217.70811 * 14 12 2 16 16 C 1.54266 * 106.60044 * 359.97438 * 15 14 12 17 17 H 1.09001 * 110.48592 * 264.92893 * 16 15 14 18 18 C 1.53005 * 110.48408 * 142.41761 * 16 15 14 19 19 N 1.46904 * 109.46867 * 66.45813 * 18 16 15 20 20 C 1.54887 * 110.48638 * 59.81486 * 12 2 1 21 21 H 1.08999 * 109.47202 * 296.04178 * 1 2 3 22 22 H 1.09003 * 109.47274 * 56.04649 * 1 2 3 23 23 H 1.09004 * 109.46989 * 176.04706 * 1 2 3 24 24 H 1.09003 * 109.46848 * 53.95684 * 3 2 1 25 25 H 1.08995 * 109.46694 * 173.95355 * 3 2 1 26 26 H 0.96992 * 120.00142 * 180.02562 * 7 6 4 27 27 H 1.09003 * 110.03179 * 336.99582 * 14 12 2 28 28 H 1.09005 * 110.03005 * 98.42323 * 14 12 2 29 29 H 1.09002 * 110.03208 * 119.28196 * 15 14 12 30 30 H 1.08996 * 110.03362 * 240.71095 * 15 14 12 31 31 H 1.08997 * 109.46610 * 186.45167 * 18 16 15 32 32 H 1.08989 * 109.47170 * 306.45426 * 18 16 15 33 33 H 1.00896 * 111.00200 * 56.03855 * 19 18 16 34 34 H 1.00894 * 110.99232 * 179.97438 * 19 18 16 35 35 H 1.09001 * 110.75744 * 274.93280 * 20 12 2 36 36 H 1.09000 * 110.75698 * 38.31099 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0745 1.5112 -2.0488 6 6 2.0276 3.3491 -1.5288 7 7 2.7127 4.0016 -0.6153 8 14 1.5838 4.1865 -3.1386 9 1 0.8165 3.2438 -3.9918 10 1 0.7567 5.3880 -2.8600 11 1 2.8256 4.5931 -3.8439 12 6 1.9954 -0.7661 1.1376 13 1 1.6968 -0.3058 2.0795 14 6 3.5320 -0.8726 1.0519 15 6 3.9026 -2.2840 1.5398 16 6 2.5784 -2.9858 1.9055 17 1 2.3744 -2.8840 2.9714 18 6 2.6281 -4.4629 1.5098 19 7 3.6274 -5.1570 2.3331 20 6 1.5087 -2.2351 1.0736 21 1 -0.3633 0.4512 0.9233 22 1 -0.3634 0.5740 -0.8525 23 1 -0.3633 -1.0253 -0.0708 24 1 1.5610 1.9273 0.8310 25 1 3.0796 1.3444 0.1082 26 1 2.9873 4.9176 -0.7773 27 1 3.8589 -0.7359 0.0211 28 1 3.9946 -0.1223 1.6933 29 1 4.4094 -2.8325 0.7458 30 1 4.5451 -2.2189 2.4179 31 1 1.6491 -4.9148 1.6689 32 1 2.9011 -4.5483 0.4581 33 1 3.4322 -5.0378 3.3157 34 1 3.6789 -6.1351 2.0909 35 1 0.5239 -2.3359 1.5300 36 1 1.4973 -2.5938 0.0444 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724051365.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:26 Heat of formation + Delta-G solvation = -36.574128 kcal Electronic energy + Delta-G solvation = -14523.550344 eV Core-core repulsion = 12233.651445 eV Total energy + Delta-G solvation = -2289.898899 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.06429 -37.23105 -34.92162 -34.00850 -30.27948 -29.49971 -28.25399 -26.36119 -24.04391 -23.18199 -20.96129 -20.21504 -18.51714 -17.06032 -16.98609 -16.56062 -15.80688 -15.46164 -15.16341 -15.11131 -14.49808 -14.29058 -13.87198 -13.42893 -12.90843 -12.87726 -12.74808 -12.53036 -12.22088 -12.09256 -11.88069 -11.73015 -11.61288 -11.41905 -11.27621 -11.13624 -10.61502 -9.48915 -9.00292 -8.20621 -6.30916 1.40153 1.41076 1.54863 2.40148 3.11707 3.29071 3.58120 3.76096 3.90958 4.12207 4.29015 4.46876 4.54413 4.62391 4.63184 4.69047 4.77783 4.83937 4.95497 5.02669 5.07530 5.08972 5.18263 5.25346 5.28952 5.39116 5.43295 5.58706 5.67342 6.07761 6.31281 6.36701 6.69193 6.71116 6.86494 7.39004 8.90984 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059828 B = 0.006267 C = 0.006024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.893862 B = 4466.690109 C = 4647.110303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.206 3.794 4 C -0.523 4.523 5 H 0.063 0.937 6 C 0.000 4.000 7 N -0.937 5.937 8 Si 0.971 3.029 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.073 3.927 13 H 0.021 0.979 14 C -0.117 4.117 15 C -0.090 4.090 16 C -0.081 4.081 17 H 0.077 0.923 18 C 0.077 3.923 19 N -0.857 5.857 20 C -0.097 4.097 21 H 0.005 0.995 22 H 0.055 0.945 23 H 0.082 0.918 24 H -0.047 1.047 25 H 0.009 0.991 26 H 0.264 0.736 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.346 0.654 34 H 0.350 0.650 35 H 0.073 0.927 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.794 -16.029 4.993 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.266 5.266 3 C 0.080 3.920 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.186 1.186 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.036 4.036 13 H 0.039 0.961 14 C -0.155 4.155 15 C -0.128 4.128 16 C -0.101 4.101 17 H 0.095 0.905 18 C -0.054 4.054 19 N -0.388 5.388 20 C -0.135 4.135 21 H 0.024 0.976 22 H 0.074 0.926 23 H 0.101 0.899 24 H -0.029 1.029 25 H 0.027 0.973 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.091 0.909 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.031 -15.609 4.252 16.210 hybrid contribution -1.029 1.019 0.509 1.535 sum -2.060 -14.590 4.761 15.484 Atomic orbital electron populations 1.22215 0.87783 1.01427 0.99403 1.62210 1.07959 1.15023 1.41362 1.19388 0.94107 0.83928 0.94584 1.21535 1.34726 0.97559 1.02353 0.91860 1.25946 0.94993 0.98062 1.00791 1.70104 1.39509 1.11864 1.36260 0.85308 0.78093 0.78178 0.78877 1.18621 1.20349 1.20368 1.22551 0.95281 0.95002 0.90773 0.96135 1.22162 0.94810 0.98005 1.00546 1.21907 0.97342 0.92869 1.00714 1.21907 0.94312 0.94341 0.99509 0.90473 1.21705 0.93458 0.92426 0.97838 1.58638 1.52810 1.18154 1.09213 1.22473 0.98231 0.91976 1.00821 0.97598 0.92577 0.89900 1.02924 0.97290 0.92715 0.93053 0.94088 0.91684 0.91646 0.94442 0.91492 0.84162 0.83710 0.90855 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.15 127.69 1.17 2.76 16 2 N -0.54 -24.46 4.58 -895.29 -4.10 -28.56 16 3 C 0.21 11.52 4.57 85.56 0.39 11.91 16 4 C -0.52 -30.68 8.46 25.60 0.22 -30.46 16 5 H 0.06 3.63 7.12 -2.91 -0.02 3.61 16 6 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 7 N -0.94 -57.95 13.29 21.45 0.28 -57.67 16 8 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 9 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.07 2.72 2.58 45.99 0.12 2.84 16 13 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 14 C -0.12 -4.31 5.14 31.32 0.16 -4.15 16 15 C -0.09 -2.52 6.18 31.32 0.19 -2.33 16 16 C -0.08 -1.90 3.05 -9.71 -0.03 -1.93 16 17 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 18 C 0.08 1.44 6.11 86.30 0.53 1.97 16 19 N -0.86 -13.95 9.43 -186.72 -1.76 -15.71 16 20 C -0.10 -2.69 4.64 31.89 0.15 -2.54 16 21 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 22 H 0.06 2.40 6.76 -2.39 -0.02 2.38 16 23 H 0.08 2.65 7.01 -2.38 -0.02 2.64 16 24 H -0.05 -2.87 8.12 -2.39 -0.02 -2.89 16 25 H 0.01 0.54 6.75 -2.39 -0.02 0.52 16 26 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 27 H 0.05 2.13 7.82 -2.39 -0.02 2.11 16 28 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.06 1.81 7.78 -2.39 -0.02 1.79 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 1.37 8.05 -2.39 -0.02 1.36 16 33 H 0.35 4.77 8.99 -89.70 -0.81 3.97 16 34 H 0.35 4.35 9.08 -89.70 -0.81 3.54 16 35 H 0.07 1.80 7.96 -2.39 -0.02 1.79 16 36 H 0.07 2.14 8.06 -2.39 -0.02 2.12 16 Total: -1.00 -66.19 284.13 -0.76 -66.95 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -0.57 Total: 9.23 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 3.36 Total: -21.49 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -5.57 Total: -101.94 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.19 -0.76 -66.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724051365.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.374 kcal (2) G-P(sol) polarization free energy of solvation -66.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds