Wall clock time and date at job start Mon Mar 30 2020 02:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27943 * 1 3 3 Si 1.86800 * 119.99983 * 2 1 4 4 H 1.48496 * 109.47177 * 240.00168 * 3 2 1 5 5 H 1.48504 * 109.46832 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47248 * 120.00070 * 3 2 1 7 7 C 1.50700 * 120.00093 * 180.02562 * 2 1 3 8 8 C 1.53000 * 109.47246 * 25.00126 * 7 2 1 9 9 C 1.52994 * 109.47097 * 65.51203 * 8 7 2 10 10 H 1.09004 * 109.08651 * 304.25176 * 9 8 7 11 11 C 1.50869 * 109.10558 * 63.35121 * 9 8 7 12 12 H 1.07995 * 127.54233 * 300.47123 * 11 9 8 13 13 S 1.76765 * 105.01676 * 120.53143 * 11 9 8 14 14 C 1.76460 * 96.87586 * 359.93292 * 13 11 9 15 15 C 1.30880 * 109.81565 * 0.04172 * 14 13 11 16 16 C 1.50708 * 109.47224 * 264.99864 * 7 2 1 17 17 O 1.20822 * 119.99654 * 33.78004 * 16 7 2 18 18 O 1.34227 * 119.99800 * 213.78404 * 16 7 2 19 19 H 0.96997 * 120.00031 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47159 * 145.00427 * 7 2 1 21 21 H 1.08995 * 109.46988 * 185.51672 * 8 7 2 22 22 H 1.08997 * 109.46594 * 305.51507 * 8 7 2 23 23 H 1.07996 * 125.08992 * 180.02562 * 14 13 11 24 24 H 1.07997 * 121.50917 * 179.97438 * 15 14 13 25 25 H 0.96697 * 116.99691 * 174.97984 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 3.0671 1.6964 -1.2125 5 1 1.2483 2.7464 0.0006 6 1 3.0672 1.6964 1.2125 7 6 2.0329 -1.3051 -0.0006 8 6 1.1558 -2.4002 -0.6107 9 6 0.9056 -2.0894 -2.0877 10 1 0.4691 -1.0942 -2.1736 11 6 2.2200 -2.1175 -2.8278 12 1 3.0914 -1.5064 -2.6449 13 16 2.0240 -3.3678 -4.0619 14 6 0.3690 -3.8172 -3.6464 15 6 -0.0493 -3.0902 -2.6417 16 6 2.3914 -1.6789 1.4147 17 8 1.6451 -1.3959 2.3217 18 8 3.5399 -2.3260 1.6675 19 1 -0.4850 0.8400 0.0004 20 1 2.9437 -1.1985 -0.5899 21 1 1.6612 -3.3618 -0.5223 22 1 0.2038 -2.4400 -0.0815 23 1 -0.2119 -4.5780 -4.1465 24 1 -1.0417 -3.2099 -2.2329 25 1 3.7626 -2.4785 2.5961 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725597864.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:21 Heat of formation + Delta-G solvation = -58.563516 kcal Electronic energy + Delta-G solvation = -12451.361867 eV Core-core repulsion = 10136.158794 eV Total energy + Delta-G solvation = -2315.203072 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90862 -36.64826 -35.53869 -34.22394 -31.10988 -27.11928 -23.34126 -22.39517 -20.76782 -18.65818 -17.73593 -17.16028 -16.38103 -15.96683 -15.01044 -14.77667 -13.66097 -13.54651 -12.91709 -12.66944 -12.23249 -11.63412 -11.26543 -11.13101 -10.90056 -10.71923 -10.23753 -10.10906 -9.84333 -9.60910 -9.23861 -8.67985 -8.32539 -7.80077 -6.36709 -3.20204 2.15120 2.29530 2.45555 2.66965 2.90263 3.06419 3.56318 3.76476 4.03274 5.10259 5.66704 5.69499 5.99179 6.26213 6.48345 6.52244 6.84304 6.89534 6.99210 7.15470 7.45353 7.82112 7.93741 8.22917 8.32553 8.40581 8.79714 9.27485 Molecular weight = 214.05amu Principal moments of inertia in cm(-1) A = 0.031567 B = 0.011768 C = 0.010562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.779775 B = 2378.860167 C = 2650.327745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C 0.018 3.982 3 Si 0.927 3.073 4 H -0.228 1.228 5 H -0.250 1.250 6 H -0.244 1.244 7 C -0.038 4.038 8 C -0.082 4.082 9 C 0.102 3.898 10 H -0.003 1.003 11 C -0.794 4.794 12 H 0.097 0.903 13 S -0.144 6.144 14 C -0.168 4.168 15 C -0.202 4.202 16 C 0.490 3.510 17 O -0.523 6.523 18 O -0.512 6.512 19 H 0.329 0.671 20 H 0.125 0.875 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.118 0.882 24 H 0.090 0.910 25 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.214 4.371 7.076 8.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.214 5.214 2 C -0.232 4.232 3 Si 0.743 3.257 4 H -0.150 1.150 5 H -0.173 1.173 6 H -0.167 1.167 7 C -0.057 4.057 8 C -0.121 4.121 9 C 0.082 3.918 10 H 0.015 0.985 11 C -0.922 4.922 12 H 0.115 0.885 13 S 0.104 5.896 14 C -0.301 4.301 15 C -0.238 4.238 16 C 0.332 3.668 17 O -0.412 6.412 18 O -0.322 6.322 19 H 0.145 0.855 20 H 0.143 0.857 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.136 0.864 24 H 0.108 0.892 25 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 1.531 4.118 5.934 7.383 hybrid contribution -0.882 0.842 1.750 2.133 sum 0.649 4.960 7.684 9.169 Atomic orbital electron populations 1.68138 1.10279 1.35560 1.07399 1.29693 0.96559 1.03993 0.92940 0.85916 0.81318 0.75633 0.82827 1.15023 1.17277 1.16687 1.20244 1.01904 0.95226 0.88376 1.21915 0.95414 0.93973 1.00803 1.17429 0.92427 0.92452 0.89453 0.98532 1.24274 1.05200 1.35271 1.27470 0.88540 1.82065 1.11304 1.47961 1.48313 1.24509 1.00126 1.03197 1.02285 1.22493 0.99329 1.01900 1.00074 1.23796 0.77644 0.72818 0.92519 1.90637 1.50588 1.52135 1.47825 1.84655 1.41128 1.71402 1.35046 0.85521 0.85745 0.93167 0.93738 0.86392 0.89214 0.74331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.60 -11.73 11.85 56.23 0.67 -11.06 15 2 C 0.02 0.34 3.52 -13.90 -0.05 0.29 15 3 Si 0.93 14.16 29.45 -169.99 -5.01 9.15 15 4 H -0.23 -3.67 7.11 56.52 0.40 -3.27 15 5 H -0.25 -3.47 7.11 56.52 0.40 -3.07 15 6 H -0.24 -3.54 7.11 56.52 0.40 -3.13 15 7 C -0.04 -0.79 2.10 -92.92 -0.20 -0.99 15 8 C -0.08 -1.99 3.74 -26.73 -0.10 -2.09 15 9 C 0.10 2.79 2.56 -93.65 -0.24 2.55 15 10 H 0.00 -0.08 6.72 -51.93 -0.35 -0.43 15 11 C -0.79 -23.73 10.65 36.09 0.38 -23.35 15 12 H 0.10 2.96 7.35 -52.49 -0.39 2.58 15 13 S -0.14 -4.08 22.98 -107.50 -2.47 -6.55 15 14 C -0.17 -4.38 11.14 29.05 0.32 -4.05 15 15 C -0.20 -5.31 9.57 -36.80 -0.35 -5.66 15 16 C 0.49 9.39 7.23 36.01 0.26 9.65 15 17 O -0.52 -10.79 17.18 -18.75 -0.32 -11.11 15 18 O -0.51 -8.15 13.42 -39.25 -0.53 -8.68 15 19 H 0.33 5.33 8.23 -40.82 -0.34 5.00 15 20 H 0.12 2.69 6.40 -51.93 -0.33 2.35 15 21 H 0.05 1.27 8.14 -51.93 -0.42 0.85 15 22 H 0.04 1.07 7.57 -51.93 -0.39 0.68 15 23 H 0.12 2.66 8.06 -52.49 -0.42 2.23 15 24 H 0.09 2.15 8.06 -52.49 -0.42 1.73 15 25 H 0.40 4.11 9.10 45.56 0.41 4.53 15 LS Contribution 236.36 15.07 3.56 3.56 Total: -1.00 -32.78 236.36 -5.51 -38.29 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -1.45 Total: 10.04 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 0.03 Total: -23.65 kcal Atomic # 7 Polarization: -11.73 SS G_CDS: 0.67 Total: -11.06 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.85 Total: -19.79 kcal Atomic # 14 Polarization: 14.16 SS G_CDS: -5.01 Total: 9.15 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -2.47 Total: -6.55 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.78 -5.51 -38.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725597864.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.271 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds