Wall clock time and date at job start Mon Mar 30 2020 02:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99960 * 2 1 4 4 H 1.48499 * 109.46796 * 239.99652 * 3 2 1 5 5 H 1.48494 * 109.47313 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47022 * 119.99798 * 3 2 1 7 7 C 1.37872 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00758 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47345 * 300.00238 * 9 7 2 11 11 O 1.42903 * 109.46442 * 60.00168 * 9 7 2 12 12 C 1.50696 * 109.47163 * 179.97438 * 9 7 2 13 13 N 1.29471 * 124.68052 * 285.02581 * 12 9 7 14 14 C 1.30777 * 117.51175 * 179.97438 * 13 12 9 15 15 C 1.37198 * 113.85879 * 0.02562 * 14 13 12 16 16 C 1.41381 * 126.19766 * 180.02562 * 15 14 13 17 17 O 1.21431 * 119.99532 * 359.97048 * 16 15 14 18 18 S 1.70918 * 124.67643 * 104.72745 * 12 9 7 19 19 H 0.96998 * 119.99752 * 0.02562 * 1 2 3 20 20 H 0.96700 * 114.00311 * 60.00230 * 11 9 7 21 21 H 1.08001 * 123.06829 * 179.97438 * 14 13 12 22 22 H 1.07992 * 120.00406 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6247 -2.5563 0.8919 11 8 0.4291 -2.5755 -1.1648 12 6 2.2303 -3.6446 0.0015 13 7 2.9180 -4.0256 -1.0272 14 6 3.7296 -5.0389 -0.8696 15 6 3.7276 -5.5593 0.3998 16 6 4.5016 -6.6509 0.8560 17 8 5.2569 -7.2199 0.0941 18 16 2.5917 -4.6153 1.3610 19 1 -0.4850 0.8401 -0.0004 20 1 0.9209 -2.5307 -1.9962 21 1 4.3445 -5.4308 -1.6663 22 1 4.4212 -6.9787 1.8818 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757124831.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:23 Heat of formation + Delta-G solvation = -65.842410 kcal Electronic energy + Delta-G solvation = -11542.826532 eV Core-core repulsion = 9189.193390 eV Total energy + Delta-G solvation = -2353.633141 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.06255 -39.63495 -37.50916 -34.37501 -32.19308 -29.86460 -27.15504 -24.90950 -23.46490 -20.12715 -19.66505 -19.12943 -17.34093 -16.87891 -16.73297 -16.02130 -15.88825 -15.47667 -14.98391 -14.57739 -14.47175 -13.47858 -13.01253 -12.81394 -12.46023 -12.15081 -11.82295 -11.31618 -10.86019 -10.72189 -10.48416 -10.33067 -9.81064 -8.22962 -6.50677 -0.93904 0.27070 0.65700 1.22968 1.42000 1.43617 1.51805 2.03642 2.36718 3.03327 3.21422 3.52580 4.08231 4.11334 4.18370 4.63007 4.94353 5.28204 5.56507 5.81553 6.37058 6.53775 6.71298 7.15771 7.30729 8.80609 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.053215 B = 0.008308 C = 0.007991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.044036 B = 3369.616374 C = 3503.252780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.037 3.963 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.576 4.576 8 H 0.054 0.946 9 C 0.294 3.706 10 H 0.068 0.932 11 O -0.563 6.563 12 C 0.056 3.944 13 N -0.514 5.514 14 C 0.125 3.875 15 C -0.386 4.386 16 C 0.431 3.569 17 O -0.501 6.501 18 S 0.238 5.762 19 H 0.268 0.732 20 H 0.365 0.635 21 H 0.194 0.806 22 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 -7.965 4.549 10.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.168 4.168 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.615 4.615 8 H 0.072 0.928 9 C 0.233 3.767 10 H 0.085 0.915 11 O -0.367 6.367 12 C -0.216 4.216 13 N -0.229 5.229 14 C -0.036 4.036 15 C -0.508 4.508 16 C 0.292 3.708 17 O -0.379 6.379 18 S 0.498 5.502 19 H 0.078 0.922 20 H 0.211 0.789 21 H 0.210 0.790 22 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.641 -7.903 5.232 10.553 hybrid contribution 1.110 0.798 -1.314 1.896 sum 5.751 -7.105 3.919 9.945 Atomic orbital electron populations 1.70144 1.07362 1.28213 1.46829 1.25793 0.95585 1.02580 0.92826 0.85547 0.78411 0.78210 0.79075 1.19908 1.20296 1.18960 1.21552 0.93104 0.90920 1.55956 0.92777 1.18147 0.85238 0.86229 0.87068 0.91455 1.86490 1.38026 1.95934 1.16221 1.29286 0.99274 1.00452 0.92615 1.66007 1.09358 1.15531 1.32017 1.23043 0.94343 0.89745 0.96506 1.26199 1.13826 1.11214 0.99585 1.22096 0.75866 0.78111 0.94684 1.90572 1.33654 1.53001 1.60635 1.83295 1.32597 1.20949 1.13399 0.92239 0.78901 0.78964 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.93 12.84 21.45 0.28 -49.66 14 2 C 0.04 1.95 5.40 84.65 0.46 2.40 14 3 Si 0.96 41.64 29.54 68.60 2.03 43.66 14 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 14 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 14 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 14 7 C -0.58 -30.43 8.75 25.60 0.22 -30.21 14 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 14 9 C 0.29 14.42 3.33 29.10 0.10 14.51 14 10 H 0.07 3.43 8.14 -2.39 -0.02 3.41 14 11 O -0.56 -28.90 12.71 -148.98 -1.89 -30.80 14 12 C 0.06 2.28 6.20 88.46 0.55 2.83 14 13 N -0.51 -20.69 10.31 -189.24 -1.95 -22.64 14 14 C 0.13 4.19 11.10 84.60 0.94 5.13 14 15 C -0.39 -11.05 6.33 22.80 0.14 -10.91 14 16 C 0.43 10.01 11.49 68.59 0.79 10.80 14 17 O -0.50 -14.97 17.60 -3.50 -0.06 -15.03 14 18 S 0.24 7.15 23.14 -56.49 -1.31 5.84 14 19 H 0.27 14.21 8.31 -92.71 -0.77 13.44 14 20 H 0.36 17.55 8.88 -74.06 -0.66 16.89 14 21 H 0.19 5.66 8.04 -2.91 -0.02 5.64 14 22 H 0.15 2.01 8.06 -2.91 -0.02 1.99 14 Total: -1.00 -63.01 229.22 0.89 -62.12 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.60 Total: 11.93 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 3.20 Total: -5.44 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -1.68 Total: -72.30 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -1.96 Total: -45.83 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 7.15 SS G_CDS: -1.31 Total: 5.84 kcal Total: -63.01 0.89 -62.12 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757124831.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.720 kcal (2) G-P(sol) polarization free energy of solvation -63.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds