Wall clock time and date at job start Mon Mar 30 2020 02:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36493 * 131.54619 * 2 1 4 4 C 1.35325 * 130.15773 * 179.97438 * 3 2 1 5 5 C 1.36089 * 127.92876 * 179.73617 * 4 3 2 6 6 O 1.33390 * 119.99629 * 180.02562 * 5 4 3 7 7 O 1.35249 * 119.99694 * 0.03364 * 5 4 3 8 8 C 1.35228 * 117.99810 * 179.97438 * 7 5 4 9 9 H 1.08004 * 120.00087 * 0.02562 * 8 7 5 10 10 C 1.36479 * 120.00110 * 179.97438 * 8 7 5 11 11 N 1.32336 * 120.00322 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99970 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47374 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47177 * 120.00107 * 12 10 8 15 15 H 1.48499 * 109.47359 * 240.00093 * 12 10 8 16 16 N 1.39108 * 104.14403 * 0.02562 * 4 3 2 17 17 S 1.69408 * 110.40205 * 359.97438 * 16 4 3 18 18 H 1.09000 * 109.46800 * 89.99427 * 1 2 3 19 19 H 1.08995 * 109.47372 * 210.00142 * 1 2 3 20 20 H 1.09004 * 109.47139 * 330.00353 * 1 2 3 21 21 H 0.96995 * 120.00610 * 179.97438 * 11 10 8 22 22 H 0.96999 * 124.80136 * 179.97438 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.4123 1.0215 0.0000 4 6 3.7651 0.9887 0.0005 5 6 4.6274 2.0416 -0.0045 6 8 5.9437 1.8255 -0.0037 7 8 4.1496 3.3069 -0.0101 8 6 5.0424 4.3225 -0.0144 9 1 6.1015 4.1106 -0.0137 10 6 4.6052 5.6154 -0.0207 11 7 3.3076 5.8752 -0.0220 12 14 5.8385 7.0184 -0.0273 13 1 7.2169 6.4658 -0.0251 14 1 5.6397 7.8465 -1.2438 15 1 5.6395 7.8582 1.1812 16 7 4.0722 -0.3680 0.0004 17 16 2.6540 -1.2946 0.0004 18 1 -0.3633 0.0001 -1.0277 19 1 -0.3634 -0.8899 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 2.9969 6.7940 -0.0261 22 1 4.9713 -0.7321 0.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885404248.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:33 Heat of formation + Delta-G solvation = 41.643009 kcal Electronic energy + Delta-G solvation = -11485.171238 eV Core-core repulsion = 9136.199014 eV Total energy + Delta-G solvation = -2348.972224 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.78826 -37.18936 -33.52491 -32.60449 -32.07280 -28.35412 -26.55095 -24.96307 -20.61042 -18.86618 -17.97016 -17.83807 -16.43264 -15.39240 -14.60969 -14.57375 -14.11276 -13.47615 -13.20691 -12.50963 -12.46569 -12.14600 -11.74756 -11.32692 -10.79668 -10.61982 -10.20521 -10.11406 -8.91491 -8.81902 -8.70145 -7.87912 -7.00233 -6.21543 -4.38030 0.09512 1.10767 2.46995 2.66721 2.96260 3.04427 3.07038 3.65155 4.24076 4.55239 4.77666 5.21115 5.36656 5.70270 5.85819 6.15311 6.37055 6.64508 6.87042 7.25154 7.41695 7.73114 8.27552 8.41768 9.40809 10.10631 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.052891 B = 0.007983 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.260788 B = 3506.485104 C = 4020.598032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.011 4.011 3 C -0.517 4.517 4 C 0.282 3.718 5 C 0.359 3.641 6 O -0.642 6.642 7 O -0.111 6.111 8 C -0.287 4.287 9 H 0.117 0.883 10 C 0.024 3.976 11 N -0.789 5.789 12 Si 0.964 3.036 13 H -0.257 1.257 14 H -0.267 1.267 15 H -0.267 1.267 16 N -0.647 5.647 17 S 0.173 5.827 18 H 0.080 0.920 19 H 0.064 0.936 20 H 0.093 0.907 21 H 0.285 0.715 22 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.122 -6.354 0.004 7.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.137 4.137 3 C -0.554 4.554 4 C 0.149 3.851 5 C 0.219 3.781 6 O -0.560 6.560 7 O -0.007 6.007 8 C -0.368 4.368 9 H 0.135 0.865 10 C -0.187 4.187 11 N -0.423 5.423 12 Si 0.785 3.215 13 H -0.181 1.181 14 H -0.192 1.192 15 H -0.192 1.192 16 N -0.361 5.361 17 S 0.349 5.651 18 H 0.098 0.902 19 H 0.083 0.917 20 H 0.112 0.888 21 H 0.095 0.905 22 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -3.885 -8.075 0.005 8.960 hybrid contribution 1.485 1.050 -0.014 1.819 sum -2.399 -7.025 -0.009 7.423 Atomic orbital electron populations 1.20179 0.85784 1.03096 1.02748 1.25647 0.99193 0.89342 0.99472 1.33541 0.97116 1.38367 0.86427 1.17085 0.89955 0.83424 0.94618 1.19267 0.87976 0.82960 0.87861 1.93456 1.10480 1.88815 1.63200 1.84108 1.38887 1.12291 1.65392 1.21926 0.91301 0.83062 1.40477 0.86549 1.25598 0.98267 0.98722 0.96121 1.70488 1.13133 1.22555 1.36116 0.85274 0.79133 0.78147 0.78909 1.18100 1.19229 1.19220 1.53310 1.12264 1.08786 1.61733 1.83088 1.03937 1.08692 1.69429 0.90182 0.91700 0.88847 0.90489 0.74531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.51 36.01 0.38 -0.38 14 2 C -0.01 -0.21 7.26 -34.94 -0.25 -0.46 14 3 C -0.52 -12.56 13.85 -41.25 -0.57 -13.13 14 4 C 0.28 7.09 6.75 -86.37 -0.58 6.50 14 5 C 0.36 10.14 7.75 29.96 0.23 10.37 14 6 O -0.64 -19.17 17.24 -36.27 -0.63 -19.80 14 7 O -0.11 -3.29 9.36 -23.46 -0.22 -3.51 14 8 C -0.29 -8.05 9.62 30.10 0.29 -7.76 14 9 H 0.12 3.24 6.85 -52.48 -0.36 2.88 14 10 C 0.02 0.61 5.45 -17.97 -0.10 0.52 14 11 N -0.79 -20.99 13.68 55.36 0.76 -20.23 14 12 Si 0.96 18.86 29.53 -169.99 -5.02 13.84 14 13 H -0.26 -4.99 7.11 56.52 0.40 -4.59 14 14 H -0.27 -5.01 7.11 56.52 0.40 -4.61 14 15 H -0.27 -5.01 7.11 56.52 0.40 -4.61 14 16 N -0.65 -13.29 6.68 31.08 0.21 -13.08 14 17 S 0.17 2.90 23.52 -107.50 -2.53 0.37 14 18 H 0.08 0.92 8.14 -51.93 -0.42 0.50 14 19 H 0.06 0.66 8.14 -51.93 -0.42 0.24 14 20 H 0.09 1.23 8.14 -51.93 -0.42 0.81 14 21 H 0.29 6.68 8.33 -40.82 -0.34 6.34 14 22 H 0.41 7.67 8.96 -40.58 -0.36 7.31 14 LS Contribution 231.07 15.07 3.48 3.48 Total: -1.00 -33.31 231.07 -5.68 -38.99 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -1.13 Total: 4.26 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -0.61 Total: -4.34 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.96 Total: -33.31 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.84 Total: -23.31 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.53 Total: 0.37 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -33.31 -5.68 -38.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885404248.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.634 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds