Wall clock time and date at job start Mon Mar 30 2020 02:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 11 11 O 1.42905 * 109.46592 * 59.99738 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.35322 * 126.03897 * 265.02216 * 12 9 7 14 14 N 1.34945 * 107.74318 * 179.97438 * 13 12 9 15 15 H 0.97006 * 126.03534 * 179.97438 * 14 13 12 16 16 N 1.40084 * 107.92810 * 0.02562 * 14 13 12 17 17 C 1.30838 * 108.20592 * 359.71273 * 16 14 13 18 18 N 1.48021 * 125.90096 * 180.25891 * 17 16 14 19 19 O 1.21798 * 119.99887 * 180.21548 * 18 17 16 20 20 O 1.21798 * 119.99795 * 0.21435 * 18 17 16 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 0.96693 * 113.99902 * 60.00946 * 11 9 7 23 23 H 1.07996 * 126.12179 * 359.97438 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4300 -2.5750 -1.1666 12 6 2.2304 -3.6445 0.0018 13 6 2.6765 -4.3119 -1.0877 14 7 3.5371 -5.2612 -0.6646 15 1 4.0122 -5.8925 -1.2274 16 7 3.6224 -5.1749 0.7310 17 6 2.8434 -4.2019 1.1287 18 7 2.6423 -3.7685 2.5297 19 8 1.8850 -2.8479 2.7796 20 8 3.2343 -4.3324 3.4325 21 1 -0.4850 -0.8401 -0.0004 22 1 0.9224 -2.5299 -1.9975 23 1 2.3942 -4.1191 -2.1121 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535756286.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:25 Heat of formation + Delta-G solvation = 0.199476 kcal Electronic energy + Delta-G solvation = -14234.537815 eV Core-core repulsion = 11473.308344 eV Total energy + Delta-G solvation = -2761.229470 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.058 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.56764 -42.49098 -38.16434 -37.65865 -34.29294 -33.62859 -32.02939 -28.50621 -27.99945 -24.97329 -23.16043 -21.98353 -19.86652 -19.70766 -19.43117 -18.90570 -18.79841 -16.96266 -16.15334 -15.69539 -15.57941 -14.83019 -14.42731 -14.06814 -13.02740 -12.86193 -12.63211 -12.46585 -12.39942 -12.20602 -11.92741 -11.60989 -11.45344 -10.69117 -10.48242 -9.80772 -8.54650 -6.40177 -1.16001 -0.21466 0.41263 1.16626 1.55821 1.63390 1.70855 1.82335 2.59916 3.12375 3.22904 3.49772 3.98197 4.09018 4.33788 4.58103 5.07921 5.34888 5.55226 5.79406 6.02177 6.14760 6.44990 6.61461 7.18025 7.52233 8.82693 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.031258 B = 0.012203 C = 0.010399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.558665 B = 2294.031610 C = 2691.822344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 1.109 2.891 4 H -0.283 1.283 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.634 4.634 8 H 0.038 0.962 9 C 0.278 3.722 10 H 0.039 0.961 11 O -0.580 6.580 12 C -0.195 4.195 13 C 0.099 3.901 14 N -0.390 5.390 15 H 0.478 0.522 16 N -0.237 5.237 17 C 0.102 3.898 18 N 0.059 4.941 19 O -0.161 6.161 20 O -0.141 6.141 21 H 0.270 0.730 22 H 0.371 0.629 23 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.331 -9.203 -6.353 13.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.210 4.210 3 Si 0.931 3.069 4 H -0.208 1.208 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.672 4.672 8 H 0.056 0.944 9 C 0.219 3.781 10 H 0.056 0.944 11 O -0.386 6.386 12 C -0.208 4.208 13 C -0.049 4.049 14 N -0.111 5.111 15 H 0.331 0.669 16 N -0.074 5.074 17 C -0.139 4.139 18 N 0.578 4.422 19 O -0.369 6.369 20 O -0.361 6.361 21 H 0.081 0.919 22 H 0.218 0.782 23 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 7.479 -8.657 -6.143 12.985 hybrid contribution 0.178 -1.259 -0.037 1.272 sum 7.657 -9.915 -6.180 13.969 Atomic orbital electron populations 1.70764 1.07839 1.31383 1.45022 1.27045 0.96444 1.05783 0.91696 0.83054 0.74267 0.71968 0.77613 1.20839 1.20953 1.18803 1.22391 0.93583 0.92702 1.58515 0.94402 1.17769 0.86432 0.88347 0.85517 0.94381 1.86533 1.39151 1.96360 1.16535 1.21219 1.05907 1.03543 0.90083 1.22976 0.91513 0.89177 1.01277 1.46161 1.34296 1.28146 1.02473 0.66924 1.77132 1.19736 1.17204 0.93329 1.22485 1.05988 1.01824 0.83593 1.42443 0.99077 0.99394 1.01241 1.94717 1.33272 1.20369 1.88567 1.94457 1.47018 1.55734 1.38879 0.91924 0.78170 0.73661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.15 13.53 21.45 0.29 -54.86 14 2 C -0.01 -0.36 5.40 84.65 0.46 0.10 14 3 Si 1.11 49.46 29.90 68.60 2.05 51.51 14 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 14 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 14 6 H -0.26 -10.55 7.11 99.48 0.71 -9.85 14 7 C -0.63 -34.15 8.75 25.60 0.22 -33.93 14 8 H 0.04 2.05 7.74 -2.91 -0.02 2.03 14 9 C 0.28 13.55 2.20 29.10 0.06 13.61 14 10 H 0.04 2.19 6.63 -2.39 -0.02 2.17 14 11 O -0.58 -25.95 11.80 -148.98 -1.76 -27.71 14 12 C -0.19 -7.61 5.17 -20.14 -0.10 -7.71 14 13 C 0.10 2.46 11.28 83.54 0.94 3.40 14 14 N -0.39 -8.24 7.36 -57.59 -0.42 -8.67 14 15 H 0.48 4.57 8.96 -213.32 -1.91 2.66 14 16 N -0.24 -7.82 12.67 -49.46 -0.63 -8.45 14 17 C 0.10 4.17 8.15 130.33 1.06 5.24 14 18 N 0.06 2.68 4.45 -49.44 -0.22 2.46 14 19 O -0.16 -8.16 17.08 18.89 0.32 -7.84 14 20 O -0.14 -6.08 19.23 18.89 0.36 -5.72 14 21 H 0.27 16.71 6.47 -92.71 -0.60 16.11 14 22 H 0.37 13.04 8.10 -74.06 -0.60 12.44 14 23 H 0.25 3.53 7.44 -2.91 -0.02 3.50 14 Total: -1.00 -74.74 223.64 1.59 -73.15 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -1.05 Total: 5.42 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 2.65 Total: -19.29 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -0.98 Total: -69.52 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -1.07 Total: -41.26 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.05 Total: 51.51 kcal Total: -74.74 1.59 -73.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535756286.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.346 kcal (2) G-P(sol) polarization free energy of solvation -74.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds