Wall clock time and date at job start Mon Mar 30 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00183 * 2 1 4 4 H 1.48502 * 109.46862 * 239.99714 * 3 2 1 5 5 H 1.48498 * 109.47136 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47575 * 119.99546 * 3 2 1 7 7 C 1.37881 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99429 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00261 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46849 * 59.99491 * 9 7 2 11 11 O 1.42901 * 109.46978 * 299.99917 * 9 7 2 12 12 C 1.50700 * 109.47217 * 180.02562 * 9 7 2 13 13 C 1.35318 * 126.03840 * 95.30408 * 12 9 7 14 14 N 1.34948 * 107.74290 * 180.16409 * 13 12 9 15 15 H 0.97001 * 126.03958 * 179.84649 * 14 13 12 16 16 N 1.40091 * 107.92562 * 359.57823 * 14 13 12 17 17 C 1.30835 * 108.20432 * 0.26140 * 16 14 13 18 18 N 1.48017 * 125.90004 * 179.97438 * 17 16 14 19 19 O 1.21805 * 119.99882 * 0.02562 * 18 17 16 20 20 O 1.21797 * 120.00240 * 180.02562 * 18 17 16 21 21 H 0.97005 * 120.00217 * 0.02562 * 1 2 3 22 22 H 0.96700 * 113.99955 * 299.99945 * 11 9 7 23 23 H 1.07999 * 126.12849 * 0.02562 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8896 11 8 0.4290 -2.5746 1.1670 12 6 2.2302 -3.6447 0.0018 13 6 2.6698 -4.3150 1.0920 14 7 3.5353 -5.2613 0.6716 15 1 4.0095 -5.8921 1.2357 16 7 3.6233 -5.1757 -0.7239 17 6 2.8408 -4.2066 -1.1242 18 7 2.6372 -3.7784 -2.5263 19 8 3.2269 -4.3462 -3.4283 20 8 1.8800 -2.8582 -2.7783 21 1 -0.4851 0.8401 -0.0004 22 1 0.9208 -2.5291 1.9984 23 1 2.3816 -4.1252 2.1153 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535756299.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:27 Heat of formation + Delta-G solvation = 6.818518 kcal Electronic energy + Delta-G solvation = -14191.129038 eV Core-core repulsion = 11430.186591 eV Total energy + Delta-G solvation = -2760.942447 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.058 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.47660 -42.39783 -37.90164 -37.46398 -34.25068 -33.54415 -31.90891 -28.67498 -28.13398 -24.97392 -23.06308 -21.79477 -19.67886 -19.59629 -19.13118 -18.79502 -18.65739 -16.65588 -16.40435 -16.01874 -15.31806 -14.81445 -14.24748 -13.42323 -12.98769 -12.87757 -12.76204 -12.71430 -12.37162 -12.31377 -12.10961 -11.39509 -11.34952 -10.74707 -10.45253 -9.80546 -8.08886 -6.33746 -1.07860 -0.12703 0.50039 1.25810 1.42751 1.46664 1.52839 1.79496 2.43765 3.14787 3.27931 3.59279 4.17879 4.20210 4.55854 4.72098 5.18216 5.52722 5.65237 5.73388 6.04213 6.11999 6.53273 6.72495 7.37268 7.55775 8.94786 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.031365 B = 0.012116 C = 0.010333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.492443 B = 2310.521115 C = 2709.210383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.038 3.962 3 Si 0.951 3.049 4 H -0.281 1.281 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.565 4.565 8 H 0.046 0.954 9 C 0.294 3.706 10 H 0.042 0.958 11 O -0.567 6.567 12 C -0.197 4.197 13 C 0.097 3.903 14 N -0.391 5.391 15 H 0.477 0.523 16 N -0.240 5.240 17 C 0.102 3.898 18 N 0.058 4.942 19 O -0.148 6.148 20 O -0.155 6.155 21 H 0.263 0.737 22 H 0.363 0.637 23 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.650 -8.644 6.376 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.166 4.166 3 Si 0.776 3.224 4 H -0.207 1.207 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.603 4.603 8 H 0.064 0.936 9 C 0.235 3.765 10 H 0.059 0.941 11 O -0.372 6.372 12 C -0.210 4.210 13 C -0.051 4.051 14 N -0.112 5.112 15 H 0.329 0.671 16 N -0.078 5.078 17 C -0.139 4.139 18 N 0.578 4.422 19 O -0.366 6.366 20 O -0.365 6.365 21 H 0.072 0.928 22 H 0.209 0.791 23 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 6.847 -9.606 6.158 13.307 hybrid contribution 0.411 1.381 0.041 1.442 sum 7.258 -8.225 6.199 12.599 Atomic orbital electron populations 1.70158 1.07313 1.27526 1.47769 1.25703 0.95386 1.02212 0.93287 0.85748 0.78558 0.79278 0.78786 1.20666 1.20668 1.18651 1.21543 0.92450 0.91652 1.54608 0.93608 1.17603 0.85884 0.86981 0.85989 0.94064 1.86610 1.38454 1.96187 1.15931 1.21463 1.05896 1.03716 0.89911 1.23002 0.91552 0.89150 1.01368 1.46170 1.34191 1.28360 1.02513 0.67051 1.77122 1.19877 1.17463 0.93289 1.22487 1.05999 1.01858 0.83533 1.42461 0.99061 0.99412 1.01270 1.94455 1.47391 1.55657 1.39094 1.94724 1.32976 1.20262 1.88539 0.92760 0.79054 0.73641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.87 12.84 21.45 0.28 -51.59 14 2 C 0.04 2.06 5.40 84.66 0.46 2.52 14 3 Si 0.95 43.01 29.54 68.60 2.03 45.04 14 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 14 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 14 6 H -0.26 -11.09 7.11 99.48 0.71 -10.39 14 7 C -0.56 -30.13 8.75 25.60 0.22 -29.91 14 8 H 0.05 2.44 7.74 -2.91 -0.02 2.41 14 9 C 0.29 14.47 2.61 29.10 0.08 14.55 14 10 H 0.04 2.42 6.75 -2.39 -0.02 2.40 14 11 O -0.57 -26.11 12.51 -148.98 -1.86 -27.97 14 12 C -0.20 -7.70 5.17 -20.14 -0.10 -7.80 14 13 C 0.10 2.43 11.27 83.54 0.94 3.37 14 14 N -0.39 -8.33 7.36 -57.59 -0.42 -8.75 14 15 H 0.48 4.65 8.96 -213.33 -1.91 2.74 14 16 N -0.24 -7.97 12.67 -49.46 -0.63 -8.59 14 17 C 0.10 4.18 8.15 130.33 1.06 5.24 14 18 N 0.06 2.67 4.45 -49.45 -0.22 2.45 14 19 O -0.15 -6.41 19.23 18.88 0.36 -6.05 14 20 O -0.16 -7.85 17.07 18.89 0.32 -7.53 14 21 H 0.26 14.56 8.31 -92.70 -0.77 13.79 14 22 H 0.36 13.01 8.09 -74.06 -0.60 12.41 14 23 H 0.25 3.53 7.44 -2.91 -0.02 3.51 14 Total: -1.00 -73.38 225.64 1.29 -72.09 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -1.22 Total: 2.93 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 2.66 Total: -12.03 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -1.00 Total: -66.49 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -1.18 Total: -41.54 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -73.38 1.29 -72.09 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535756299.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.909 kcal (2) G-P(sol) polarization free energy of solvation -73.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds