Wall clock time and date at job start Mon Mar 30 2020 02:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48501 * 109.47189 * 269.99994 * 3 2 1 5 5 H 1.48499 * 109.46962 * 30.00145 * 3 2 1 6 6 H 1.48508 * 109.46931 * 149.99962 * 3 2 1 7 7 C 1.37878 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00144 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99697 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47428 * 300.00112 * 9 7 2 11 11 O 1.42898 * 109.47320 * 59.99955 * 9 7 2 12 12 C 1.50693 * 109.46915 * 180.02562 * 9 7 2 13 13 N 1.30843 * 125.90371 * 285.21119 * 12 9 7 14 14 N 1.40079 * 108.20873 * 180.25447 * 13 12 9 15 15 H 0.97004 * 126.03482 * 179.69943 * 14 13 12 16 16 C 1.34950 * 107.92688 * 359.72456 * 14 13 12 17 17 C 1.35320 * 107.74446 * 359.97438 * 16 14 13 18 18 N 1.48020 * 126.03916 * 180.02562 * 17 16 14 19 19 O 1.21803 * 119.99894 * 0.02562 * 18 17 16 20 20 O 1.21799 * 119.99903 * 179.75031 * 18 17 16 21 21 H 0.97004 * 119.99398 * 359.97438 * 1 2 3 22 22 H 0.96703 * 114.00083 * 59.99535 * 11 9 7 23 23 H 1.07998 * 126.12630 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8879 11 8 0.4299 -2.5741 -1.1688 12 6 2.2302 -3.6446 -0.0015 13 7 2.9410 -4.0466 -1.0238 14 7 3.7186 -5.1375 -0.6144 15 1 4.3377 -5.6372 -1.1693 16 6 3.4539 -5.3706 0.6882 17 6 2.5397 -4.4587 1.0930 18 7 1.9641 -4.3468 2.4521 19 8 2.3105 -5.1215 3.3259 20 8 1.1479 -3.4768 2.6980 21 1 -0.4849 0.8401 0.0004 22 1 0.9223 -2.5281 -1.9998 23 1 3.8936 -6.1456 1.2985 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535796166.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:23 Heat of formation + Delta-G solvation = 21.415593 kcal Electronic energy + Delta-G solvation = -14130.012550 eV Core-core repulsion = 11369.703080 eV Total energy + Delta-G solvation = -2760.309470 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.058 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.91305 -40.75220 -36.08347 -35.58659 -32.21285 -31.83169 -30.77770 -27.26435 -25.64696 -23.63522 -21.32284 -20.03910 -18.88596 -17.90527 -17.19275 -16.80451 -16.69245 -15.02868 -14.65824 -14.58770 -13.99770 -13.05494 -12.62059 -11.47040 -11.34460 -11.12479 -10.94271 -10.84882 -10.51033 -10.36475 -10.30060 -9.68862 -9.33348 -9.29698 -8.60751 -8.43152 -6.07093 -4.26591 0.74708 1.84012 1.87405 2.81907 2.85616 3.27951 3.34625 3.37994 4.35365 4.51416 4.66270 5.03633 5.24573 5.41712 6.21300 6.37014 6.85210 6.98667 7.28438 7.69837 7.81363 7.96141 8.32794 8.71381 9.20117 9.46981 10.97326 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.032906 B = 0.011256 C = 0.010050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.707068 B = 2487.048780 C = 2785.348484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.085 3.915 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.564 4.564 8 H 0.055 0.945 9 C 0.282 3.718 10 H 0.111 0.889 11 O -0.552 6.552 12 C 0.151 3.849 13 N -0.276 5.276 14 N -0.460 5.460 15 H 0.449 0.551 16 C 0.142 3.858 17 C -0.186 4.186 18 N 0.071 4.929 19 O -0.205 6.205 20 O -0.134 6.134 21 H 0.265 0.735 22 H 0.352 0.648 23 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.292 -9.504 -0.585 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.123 4.123 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.603 4.603 8 H 0.074 0.926 9 C 0.223 3.777 10 H 0.128 0.872 11 O -0.354 6.354 12 C -0.019 4.019 13 N -0.098 5.098 14 N -0.165 5.165 15 H 0.295 0.705 16 C -0.015 4.015 17 C -0.285 4.285 18 N 0.586 4.414 19 O -0.409 6.409 20 O -0.354 6.354 21 H 0.075 0.925 22 H 0.197 0.803 23 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 7.206 -9.370 -1.978 11.985 hybrid contribution 1.208 0.417 0.544 1.389 sum 8.414 -8.953 -1.434 12.370 Atomic orbital electron populations 1.70064 1.05870 1.26959 1.45570 1.24964 0.94790 0.99099 0.93403 0.86525 0.79876 0.82930 0.78191 1.20446 1.20753 1.19865 1.21266 0.92924 0.89931 1.56147 0.92625 1.18797 0.85689 0.84763 0.88488 0.87154 1.86635 1.37541 1.95808 1.15436 1.24736 0.94844 0.95643 0.86652 1.77775 1.09140 1.01276 1.21641 1.46458 1.35328 1.26739 1.07955 0.70456 1.22212 0.94578 0.97579 0.87110 1.21112 1.11940 1.08599 0.86808 1.42433 0.98891 0.99011 1.01020 1.94445 1.65877 1.40327 1.40260 1.94619 1.26757 1.27565 1.86495 0.92533 0.80336 0.78342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.79 12.84 55.43 0.71 -24.08 14 2 C 0.09 2.37 5.40 -17.82 -0.10 2.28 14 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 14 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 14 7 C -0.56 -15.62 8.75 -34.44 -0.30 -15.92 14 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 14 9 C 0.28 7.34 3.10 -29.04 -0.09 7.25 14 10 H 0.11 3.12 5.78 -51.93 -0.30 2.82 14 11 O -0.55 -14.43 12.72 -35.23 -0.45 -14.88 14 12 C 0.15 3.29 6.02 -82.40 -0.50 2.80 14 13 N -0.28 -5.22 12.60 33.67 0.42 -4.79 14 14 N -0.46 -5.93 7.36 30.45 0.22 -5.71 14 15 H 0.45 3.50 8.96 -182.61 -1.64 1.86 14 16 C 0.14 1.89 11.67 -17.22 -0.20 1.69 14 17 C -0.19 -3.58 7.11 -80.37 -0.57 -4.15 14 18 N 0.07 1.48 4.45 33.75 0.15 1.63 14 19 O -0.21 -3.95 19.02 -29.46 -0.56 -4.51 14 20 O -0.13 -3.13 16.70 -29.46 -0.49 -3.62 14 21 H 0.26 7.26 8.31 -40.82 -0.34 6.92 14 22 H 0.35 8.27 8.95 45.56 0.41 8.68 14 23 H 0.20 1.67 8.06 -52.49 -0.42 1.24 14 LS Contribution 226.40 15.07 3.41 3.41 Total: -1.00 -33.17 226.40 -4.85 -38.01 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -1.49 Total: 4.38 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.76 Total: -6.06 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 1.51 Total: -32.94 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -1.50 Total: -23.01 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -33.17 -4.85 -38.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535796166.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.430 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds