Wall clock time and date at job start Mon Mar 30 2020 02:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48501 * 109.47189 * 269.99994 * 3 2 1 5 5 H 1.48499 * 109.46962 * 30.00145 * 3 2 1 6 6 H 1.48508 * 109.46931 * 149.99962 * 3 2 1 7 7 C 1.37878 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00144 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99697 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47428 * 300.00112 * 9 7 2 11 11 O 1.42898 * 109.47320 * 59.99955 * 9 7 2 12 12 C 1.50693 * 109.46915 * 180.02562 * 9 7 2 13 13 N 1.30843 * 125.90371 * 285.21119 * 12 9 7 14 14 N 1.40079 * 108.20873 * 180.25447 * 13 12 9 15 15 H 0.97004 * 126.03482 * 179.69943 * 14 13 12 16 16 C 1.34950 * 107.92688 * 359.72456 * 14 13 12 17 17 C 1.35320 * 107.74446 * 359.97438 * 16 14 13 18 18 N 1.48020 * 126.03916 * 180.02562 * 17 16 14 19 19 O 1.21803 * 119.99894 * 0.02562 * 18 17 16 20 20 O 1.21799 * 119.99903 * 179.75031 * 18 17 16 21 21 H 0.97004 * 119.99398 * 359.97438 * 1 2 3 22 22 H 0.96703 * 114.00083 * 59.99535 * 11 9 7 23 23 H 1.07998 * 126.12630 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8879 11 8 0.4299 -2.5741 -1.1688 12 6 2.2302 -3.6446 -0.0015 13 7 2.9410 -4.0466 -1.0238 14 7 3.7186 -5.1375 -0.6144 15 1 4.3377 -5.6372 -1.1693 16 6 3.4539 -5.3706 0.6882 17 6 2.5397 -4.4587 1.0930 18 7 1.9641 -4.3468 2.4521 19 8 2.3105 -5.1215 3.3259 20 8 1.1479 -3.4768 2.6980 21 1 -0.4849 0.8401 0.0004 22 1 0.9223 -2.5281 -1.9998 23 1 3.8936 -6.1456 1.2985 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535796166.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:23 Heat of formation + Delta-G solvation = -6.223727 kcal Electronic energy + Delta-G solvation = -14131.211081 eV Core-core repulsion = 11369.703080 eV Total energy + Delta-G solvation = -2761.508001 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.058 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.37478 -42.23043 -37.88716 -37.32030 -34.34640 -33.31217 -32.19586 -29.24104 -27.12646 -25.54423 -22.77975 -21.64093 -20.27644 -19.45269 -19.19692 -18.45937 -17.97870 -16.80820 -16.73990 -15.95189 -15.63030 -14.94959 -14.31034 -13.52100 -13.09589 -12.86583 -12.78262 -12.47338 -12.16406 -12.12953 -11.96257 -11.53761 -11.01896 -10.69701 -10.66556 -10.41917 -8.18727 -6.45955 -0.68692 0.46069 0.48475 1.26164 1.40437 1.41152 1.51764 1.65208 2.37640 3.05969 3.28706 3.37207 3.76316 4.14005 4.24638 4.67274 5.26138 5.51002 5.55798 5.88800 5.97598 6.17549 6.58830 6.74299 7.20312 7.35533 8.86721 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.032906 B = 0.011256 C = 0.010050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.707068 B = 2487.048780 C = 2785.348484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.033 3.967 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.576 4.576 8 H 0.051 0.949 9 C 0.281 3.719 10 H 0.075 0.925 11 O -0.568 6.568 12 C 0.124 3.876 13 N -0.290 5.290 14 N -0.425 5.425 15 H 0.476 0.524 16 C 0.197 3.803 17 C -0.227 4.227 18 N 0.075 4.925 19 O -0.138 6.138 20 O -0.243 6.243 21 H 0.267 0.733 22 H 0.360 0.640 23 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.166 -11.369 -0.867 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.171 4.171 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.614 4.614 8 H 0.069 0.931 9 C 0.221 3.779 10 H 0.093 0.907 11 O -0.371 6.371 12 C -0.046 4.046 13 N -0.113 5.113 14 N -0.134 5.134 15 H 0.329 0.671 16 C 0.038 3.962 17 C -0.326 4.326 18 N 0.586 4.414 19 O -0.363 6.363 20 O -0.436 6.436 21 H 0.076 0.924 22 H 0.206 0.794 23 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 9.964 -11.060 -2.345 15.069 hybrid contribution 0.519 0.668 0.624 1.051 sum 10.483 -10.392 -1.721 14.861 Atomic orbital electron populations 1.70195 1.07554 1.27937 1.46910 1.25860 0.95611 1.02810 0.92867 0.85454 0.78440 0.78381 0.78657 1.19249 1.20215 1.19472 1.21530 0.92745 0.91336 1.55809 0.93094 1.18287 0.86089 0.86501 0.86987 0.90747 1.86570 1.38427 1.96073 1.16041 1.23896 0.95687 0.96008 0.88965 1.77640 1.09476 1.03136 1.21082 1.46427 1.33899 1.24659 1.08401 0.67113 1.23078 0.90696 0.95722 0.86659 1.21336 1.14792 1.10973 0.85463 1.42628 0.98480 0.98518 1.01807 1.94358 1.63186 1.38169 1.40590 1.94673 1.30801 1.30587 1.87563 0.92402 0.79444 0.71839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.10 12.84 21.45 0.28 -53.83 14 2 C 0.03 1.86 5.40 84.65 0.46 2.32 14 3 Si 0.97 44.37 29.54 68.60 2.03 46.39 14 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 14 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 14 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 14 7 C -0.58 -33.00 8.75 25.60 0.22 -32.78 14 8 H 0.05 2.88 7.74 -2.91 -0.02 2.85 14 9 C 0.28 15.32 3.10 29.10 0.09 15.41 14 10 H 0.08 4.58 5.78 -2.39 -0.01 4.57 14 11 O -0.57 -31.09 12.72 -148.98 -1.90 -32.99 14 12 C 0.12 5.42 6.02 43.10 0.26 5.68 14 13 N -0.29 -10.43 12.60 -47.38 -0.60 -11.02 14 14 N -0.43 -8.93 7.36 -57.59 -0.42 -9.35 14 15 H 0.48 4.59 8.96 -213.33 -1.91 2.68 14 16 C 0.20 4.19 11.67 83.54 0.98 5.17 14 17 C -0.23 -8.31 7.11 36.10 0.26 -8.06 14 18 N 0.08 3.12 4.45 -47.12 -0.21 2.91 14 19 O -0.14 -4.90 19.02 18.88 0.36 -4.55 14 20 O -0.24 -12.19 16.70 18.89 0.32 -11.88 14 21 H 0.27 15.18 8.31 -92.71 -0.77 14.41 14 22 H 0.36 17.61 8.95 -74.06 -0.66 16.95 14 23 H 0.27 2.11 8.06 -2.91 -0.02 2.09 14 Total: -1.00 -77.91 226.40 0.83 -77.08 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -1.28 Total: 9.49 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 2.26 Total: -12.26 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -0.96 Total: -71.29 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -1.22 Total: -49.41 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -77.91 0.83 -77.08 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535796166.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.853 kcal (2) G-P(sol) polarization free energy of solvation -77.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds