Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42895 * 109.47266 * 59.99864 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.35312 * 126.13387 * 89.71141 * 12 9 7 14 14 C 1.39863 * 107.92470 * 179.84580 * 13 12 9 15 15 N 1.48014 * 125.90250 * 180.16342 * 14 13 12 16 16 O 1.21802 * 120.00290 * 180.27085 * 15 14 13 17 17 O 1.21802 * 119.99922 * 0.27828 * 15 14 13 18 18 N 1.30837 * 108.20258 * 0.42450 * 14 13 12 19 19 N 1.34951 * 126.12346 * 270.01993 * 12 9 7 20 20 H 0.96997 * 126.03875 * 0.03608 * 19 12 9 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 0.96698 * 114.00355 * 60.00228 * 11 9 7 23 23 H 1.08007 * 126.03582 * 359.97129 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 8 3.9874 -0.5213 1.1674 12 6 4.0137 -2.6150 -0.0013 13 6 4.2749 -3.3679 -1.0949 14 6 4.7229 -4.6191 -0.6591 15 7 5.1232 -5.7486 -1.5279 16 8 5.4939 -6.7973 -1.0314 17 8 5.0820 -5.6294 -2.7394 18 7 4.7219 -4.6206 0.6493 19 7 4.2781 -3.3664 1.0880 20 1 4.1779 -3.0876 2.0116 21 1 -0.4850 0.8401 0.0004 22 1 3.7018 -0.9253 1.9982 23 1 4.1597 -3.0568 -2.1228 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535817104.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = 4.521134 kcal Electronic energy + Delta-G solvation = -13732.986239 eV Core-core repulsion = 10971.944170 eV Total energy + Delta-G solvation = -2761.042069 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.058 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.61834 -42.61322 -38.17900 -37.86104 -34.60856 -33.48719 -32.41729 -29.27540 -28.34564 -25.08193 -23.01713 -22.14854 -20.10573 -19.84549 -19.20807 -18.95616 -18.84622 -17.01413 -16.34213 -16.12021 -15.66611 -14.97480 -14.70912 -13.99338 -13.28244 -13.02658 -12.92252 -12.79098 -12.53157 -12.46350 -12.04069 -11.65410 -11.41489 -10.96199 -10.93750 -10.15397 -8.43879 -6.66133 -1.17201 -0.35318 0.39307 1.15102 1.46757 1.48090 1.55805 1.61071 2.32841 2.84644 3.13439 3.46663 3.72762 4.00097 4.12984 4.71546 4.93502 5.08988 5.15873 5.54633 5.85425 5.94249 6.42217 6.48637 6.85833 7.13716 8.69026 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.055143 B = 0.007943 C = 0.007638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.647951 B = 3524.066243 C = 3665.057080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.042 3.958 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.249 1.249 6 H -0.304 1.304 7 C -0.568 4.568 8 H 0.042 0.958 9 C 0.261 3.739 10 H 0.107 0.893 11 O -0.573 6.573 12 C 0.128 3.872 13 C -0.224 4.224 14 C 0.110 3.890 15 N 0.061 4.939 16 O -0.155 6.155 17 O -0.125 6.125 18 N -0.235 5.235 19 N -0.401 5.401 20 H 0.467 0.533 21 H 0.274 0.726 22 H 0.379 0.621 23 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.833 -2.076 1.265 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.161 4.161 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.173 1.173 6 H -0.232 1.232 7 C -0.605 4.605 8 H 0.060 0.940 9 C 0.201 3.799 10 H 0.124 0.876 11 O -0.380 6.380 12 C -0.002 4.002 13 C -0.255 4.255 14 C -0.133 4.133 15 N 0.585 4.415 16 O -0.369 6.369 17 O -0.344 6.344 18 N -0.070 5.070 19 N -0.120 5.120 20 H 0.318 0.682 21 H 0.083 0.917 22 H 0.229 0.771 23 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.030 -1.812 2.226 9.475 hybrid contribution -0.644 0.374 -0.040 0.746 sum 8.386 -1.438 2.186 8.785 Atomic orbital electron populations 1.70034 1.08503 1.29099 1.48574 1.25770 0.95249 1.03320 0.91742 0.85324 0.78465 0.77362 0.79065 1.19578 1.17278 1.23227 1.21379 0.90092 0.93914 1.55146 0.94002 1.18682 0.91890 0.80970 0.88354 0.87555 1.86499 1.76829 1.57753 1.16927 1.22417 0.94449 0.97333 0.86034 1.21130 1.11244 0.90389 1.02708 1.22611 1.09965 0.89723 0.90984 1.42245 0.98111 1.00370 1.00758 1.94571 1.48576 1.15218 1.78525 1.94559 1.56780 1.88406 0.94663 1.77163 1.19228 1.01642 1.08947 1.46184 1.48746 1.06723 1.10351 0.68181 0.91729 0.77132 0.79622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.42 13.96 21.45 0.30 -51.12 14 2 C 0.04 2.11 5.47 84.66 0.46 2.57 14 3 Si 0.97 40.26 26.18 68.60 1.80 42.06 14 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 14 5 H -0.25 -9.60 6.54 99.48 0.65 -8.95 14 6 H -0.30 -12.86 7.11 99.48 0.71 -12.16 14 7 C -0.57 -26.97 9.33 25.60 0.24 -26.73 14 8 H 0.04 2.28 7.98 -2.91 -0.02 2.25 14 9 C 0.26 9.61 2.78 29.10 0.08 9.69 14 10 H 0.11 3.88 7.20 -2.39 -0.02 3.86 14 11 O -0.57 -18.91 10.99 -148.98 -1.64 -20.55 14 12 C 0.13 4.25 6.07 41.40 0.25 4.50 14 13 C -0.22 -7.45 10.43 21.99 0.23 -7.22 14 14 C 0.11 3.78 8.15 130.33 1.06 4.84 14 15 N 0.06 2.10 4.45 -49.45 -0.22 1.88 14 16 O -0.15 -5.42 19.23 18.88 0.36 -5.06 14 17 O -0.12 -4.15 19.04 18.88 0.36 -3.79 14 18 N -0.24 -7.79 12.67 -49.47 -0.63 -8.41 14 19 N -0.40 -11.55 7.23 -48.00 -0.35 -11.90 14 20 H 0.47 9.88 8.32 -213.33 -1.77 8.11 14 21 H 0.27 14.27 8.31 -92.70 -0.77 13.50 14 22 H 0.38 9.82 8.34 -74.06 -0.62 9.20 14 23 H 0.19 5.54 8.06 -2.91 -0.02 5.52 14 Total: -1.00 -59.31 224.94 1.15 -58.16 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -1.16 Total: 11.08 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 2.33 Total: -12.36 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -0.89 Total: -69.55 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.91 Total: -29.39 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 1.80 Total: 42.06 kcal Total: -59.31 1.15 -58.16 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535817104.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.680 kcal (2) G-P(sol) polarization free energy of solvation -59.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds