Wall clock time and date at job start Mon Mar 30 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86804 * 119.99621 * 2 1 4 4 H 1.48501 * 109.47151 * 269.99907 * 3 2 1 5 5 H 1.48496 * 109.47179 * 29.99693 * 3 2 1 6 6 H 1.48501 * 109.47024 * 150.00085 * 3 2 1 7 7 C 1.37866 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00455 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99993 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46709 * 59.99566 * 9 7 2 11 11 O 1.42893 * 109.46980 * 299.99613 * 9 7 2 12 12 C 1.50697 * 109.47306 * 179.97438 * 9 7 2 13 13 C 1.35325 * 126.12370 * 85.00067 * 12 9 7 14 14 C 1.39868 * 107.91737 * 180.28632 * 13 12 9 15 15 N 1.48021 * 125.89605 * 179.73664 * 14 13 12 16 16 O 1.21806 * 120.00138 * 0.02562 * 15 14 13 17 17 O 1.21800 * 120.00153 * 179.97438 * 15 14 13 18 18 N 1.30839 * 108.20745 * 359.55204 * 14 13 12 19 19 N 1.34941 * 126.13075 * 265.02929 * 12 9 7 20 20 H 0.97002 * 126.04020 * 0.02562 * 19 12 9 21 21 H 0.96995 * 119.99752 * 359.97438 * 1 2 3 22 22 H 0.96700 * 114.00278 * 300.00352 * 11 9 7 23 23 H 1.08002 * 126.03725 * 0.02562 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1939 0.0000 10 1 3.8746 -0.6806 0.8905 11 8 3.9884 -0.5196 -1.1661 12 6 4.0141 -2.6146 -0.0001 13 6 4.1907 -3.3983 -1.0891 14 6 4.6631 -4.6405 -0.6533 15 7 4.9846 -5.7986 -1.5174 16 8 4.8432 -5.7157 -2.7243 17 8 5.3913 -6.8341 -1.0215 18 7 4.7756 -4.6009 0.6497 19 7 4.3679 -3.3335 1.0857 20 1 4.3437 -3.0272 2.0057 21 1 -0.4849 0.8400 0.0004 22 1 3.7033 -0.9225 -1.9976 23 1 3.9967 -3.1159 -2.1133 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535817107.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:00 Heat of formation + Delta-G solvation = 4.836263 kcal Electronic energy + Delta-G solvation = -13757.591282 eV Core-core repulsion = 10996.562878 eV Total energy + Delta-G solvation = -2761.028404 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.058 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.61115 -42.59514 -38.13564 -37.84836 -34.58159 -33.71579 -31.98239 -29.40850 -28.32884 -25.09814 -23.09442 -21.95195 -20.19302 -19.83181 -19.18708 -18.94322 -18.80241 -17.04375 -16.35640 -16.06493 -15.61832 -15.01437 -14.64861 -13.91681 -13.30741 -13.01002 -12.92375 -12.77461 -12.50810 -12.46096 -12.03009 -11.64215 -11.40274 -10.93768 -10.87721 -10.16302 -8.42960 -6.65088 -1.16835 -0.34608 0.39866 1.16548 1.45679 1.49751 1.55438 1.61506 2.33281 2.89240 3.13677 3.47124 3.81925 4.00781 4.05769 4.70599 4.92837 5.09680 5.16862 5.56237 5.87459 5.97317 6.42519 6.49753 6.93621 7.15198 8.69989 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.056141 B = 0.007943 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.623082 B = 3524.358588 C = 3559.142274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.042 3.958 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.304 1.304 6 H -0.248 1.248 7 C -0.566 4.566 8 H 0.041 0.959 9 C 0.261 3.739 10 H 0.098 0.902 11 O -0.569 6.569 12 C 0.126 3.874 13 C -0.220 4.220 14 C 0.109 3.891 15 N 0.061 4.939 16 O -0.124 6.124 17 O -0.157 6.157 18 N -0.236 5.236 19 N -0.402 5.402 20 H 0.469 0.531 21 H 0.273 0.727 22 H 0.385 0.615 23 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.909 -2.057 0.214 9.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.161 4.161 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.232 1.232 6 H -0.172 1.172 7 C -0.604 4.604 8 H 0.060 0.940 9 C 0.201 3.799 10 H 0.116 0.884 11 O -0.376 6.376 12 C -0.005 4.005 13 C -0.251 4.251 14 C -0.133 4.133 15 N 0.585 4.415 16 O -0.343 6.343 17 O -0.370 6.370 18 N -0.071 5.071 19 N -0.122 5.122 20 H 0.320 0.680 21 H 0.082 0.918 22 H 0.236 0.764 23 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.227 -1.739 2.033 9.607 hybrid contribution -0.655 0.351 -0.768 1.068 sum 8.572 -1.388 1.265 8.776 Atomic orbital electron populations 1.70035 1.08495 1.29067 1.48707 1.25766 0.95239 1.03291 0.91798 0.85325 0.78385 0.77397 0.79084 1.19782 1.23226 1.17213 1.21376 0.90087 0.93885 1.55018 0.94020 1.18463 0.91646 0.81272 0.88480 0.88441 1.86417 1.77234 1.56863 1.17124 1.22522 0.94131 0.97799 0.86072 1.21059 1.11384 0.89752 1.02856 1.22613 1.10282 0.89268 0.91171 1.42254 0.98091 1.00411 1.00737 1.94558 1.55725 1.88958 0.95094 1.94572 1.46977 1.17229 1.78251 1.77165 1.19885 1.00974 1.09084 1.46292 1.48177 1.07003 1.10754 0.68018 0.91752 0.76434 0.79558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.58 13.96 21.44 0.30 -51.28 14 2 C 0.04 2.10 5.47 84.65 0.46 2.56 14 3 Si 0.97 40.35 26.18 68.60 1.80 42.15 14 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 14 5 H -0.30 -12.81 7.11 99.48 0.71 -12.10 14 6 H -0.25 -9.46 6.54 99.48 0.65 -8.81 14 7 C -0.57 -26.94 9.33 25.60 0.24 -26.70 14 8 H 0.04 2.27 7.98 -2.91 -0.02 2.25 14 9 C 0.26 9.63 2.83 29.10 0.08 9.71 14 10 H 0.10 3.37 7.20 -2.39 -0.02 3.35 14 11 O -0.57 -19.96 10.91 -148.98 -1.63 -21.59 14 12 C 0.13 4.14 6.21 41.41 0.26 4.40 14 13 C -0.22 -7.18 9.88 21.99 0.22 -6.97 14 14 C 0.11 3.74 8.15 130.33 1.06 4.80 14 15 N 0.06 2.09 4.45 -49.44 -0.22 1.87 14 16 O -0.12 -4.09 19.04 18.88 0.36 -3.73 14 17 O -0.16 -5.49 19.23 18.89 0.36 -5.13 14 18 N -0.24 -7.84 12.67 -49.46 -0.63 -8.46 14 19 N -0.40 -11.72 7.36 -48.00 -0.35 -12.08 14 20 H 0.47 10.15 8.96 -213.32 -1.91 8.24 14 21 H 0.27 14.29 8.31 -92.71 -0.77 13.52 14 22 H 0.39 11.50 8.19 -74.06 -0.61 10.89 14 23 H 0.19 5.33 7.58 -2.91 -0.02 5.31 14 Total: -1.00 -59.36 224.65 1.03 -58.34 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -1.29 Total: 12.10 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 2.32 Total: -12.19 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.90 Total: -69.95 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.90 Total: -30.44 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.80 Total: 42.15 kcal Total: -59.36 1.03 -58.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535817107.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.174 kcal (2) G-P(sol) polarization free energy of solvation -59.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds