Wall clock time and date at job start Mon Mar 30 2020 02:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.33386 * 125.20529 * 89.71611 * 10 9 7 12 12 C 1.38420 * 114.92109 * 179.79420 * 11 10 9 13 13 C 1.33389 * 114.92289 * 0.50006 * 12 11 10 14 14 N 1.48038 * 125.20850 * 179.76481 * 13 12 11 15 15 O 1.21795 * 119.99806 * 359.97438 * 14 13 12 16 16 O 1.21802 * 120.00158 * 179.97438 * 14 13 12 17 17 S 1.75883 * 125.20198 * 270.02548 * 10 9 7 18 18 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 19 19 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 20 20 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 21 21 H 1.07998 * 122.53702 * 359.97438 * 11 10 9 22 22 H 1.07999 * 122.54514 * 180.23071 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 6 2.7382 -4.2281 1.0746 12 6 3.6179 -5.2665 0.8218 13 6 3.8324 -5.5196 -0.4701 14 7 4.7307 -6.5722 -0.9960 15 8 5.3446 -7.2892 -0.2263 16 8 4.8559 -6.7213 -2.1983 17 16 2.8841 -4.4117 -1.4535 18 1 -0.4849 0.8401 0.0041 19 1 0.6280 -2.5591 0.8866 20 1 0.6206 -2.5548 -0.8933 21 1 2.4802 -3.9159 2.0758 22 1 4.0977 -5.8265 1.6108 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535849314.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:48 Heat of formation + Delta-G solvation = 15.841934 kcal Electronic energy + Delta-G solvation = -11328.932584 eV Core-core repulsion = 8978.841542 eV Total energy + Delta-G solvation = -2350.091042 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.76525 -37.95931 -36.26773 -33.72880 -31.37366 -28.46065 -25.51418 -23.54977 -22.32605 -20.10921 -18.86848 -17.53974 -17.33282 -16.65464 -16.06686 -14.89918 -14.25933 -13.24950 -12.82750 -12.48118 -12.14586 -11.63663 -11.38200 -11.16138 -11.00523 -10.97307 -10.87907 -10.57653 -10.16029 -9.92071 -8.72106 -8.63528 -8.50224 -6.35343 -4.43249 0.07185 0.98597 1.55436 1.83297 2.12126 2.74245 3.15954 3.21245 3.24119 4.20058 5.00163 5.07444 5.16046 5.51515 5.97200 6.21920 6.31209 6.54721 7.02547 7.09484 7.57357 7.84157 7.86928 8.59794 9.23449 10.74092 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.059633 B = 0.007174 C = 0.007086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.425955 B = 3902.036320 C = 3950.254654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.069 3.931 10 C -0.046 4.046 11 C -0.195 4.195 12 C -0.014 4.014 13 C -0.223 4.223 14 N 0.074 4.926 15 O -0.172 6.172 16 O -0.176 6.176 17 S 0.214 5.786 18 H 0.268 0.732 19 H 0.056 0.944 20 H 0.043 0.957 21 H 0.160 0.840 22 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 -6.559 0.741 7.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.030 3.970 10 C -0.166 4.166 11 C -0.222 4.222 12 C -0.051 4.051 13 C -0.424 4.424 14 N 0.589 4.411 15 O -0.385 6.385 16 O -0.388 6.388 17 S 0.479 5.521 18 H 0.078 0.922 19 H 0.074 0.926 20 H 0.061 0.939 21 H 0.177 0.823 22 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.851 -5.779 -0.619 6.474 hybrid contribution 0.903 0.405 1.460 1.764 sum 3.754 -5.374 0.842 6.610 Atomic orbital electron populations 1.69918 1.06103 1.27736 1.48696 1.24997 0.94997 0.99540 0.94308 0.86459 0.79518 0.81989 0.79032 1.19857 1.20895 1.19886 1.20906 0.93188 0.88941 1.53665 0.91967 1.18289 0.91394 0.87306 1.00057 1.26308 0.98478 0.98015 0.93807 1.20038 1.02135 0.98697 1.01337 1.20308 0.94769 0.95715 0.94301 1.25780 1.12278 1.04867 0.99441 1.42524 0.98690 0.99421 1.00489 1.94499 1.45695 1.42561 1.55775 1.94536 1.70317 1.75936 0.97994 1.84727 1.36672 1.23402 1.07302 0.92199 0.92630 0.93918 0.82280 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 13.29 55.43 0.74 -23.19 14 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 14 3 Si 0.90 19.95 29.54 -169.99 -5.02 14.92 14 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 14 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 14 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 14 7 C -0.53 -13.26 9.09 -34.44 -0.31 -13.58 14 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 14 9 C 0.07 1.53 5.47 -29.04 -0.16 1.37 14 10 C -0.05 -0.85 5.70 -36.01 -0.21 -1.06 14 11 C -0.20 -3.19 10.05 -41.21 -0.41 -3.60 14 12 C -0.01 -0.21 9.81 -41.21 -0.40 -0.62 14 13 C -0.22 -3.83 7.50 -11.32 -0.08 -3.91 14 14 N 0.07 1.34 4.46 33.44 0.15 1.49 14 15 O -0.17 -3.06 18.94 -29.46 -0.56 -3.62 14 16 O -0.18 -3.26 19.08 -29.46 -0.56 -3.83 14 17 S 0.21 3.72 23.12 -107.50 -2.49 1.24 14 18 H 0.27 6.87 8.31 -40.82 -0.34 6.53 14 19 H 0.06 1.28 8.14 -51.93 -0.42 0.86 14 20 H 0.04 1.00 8.14 -51.93 -0.42 0.58 14 21 H 0.16 2.32 8.06 -52.49 -0.42 1.90 14 22 H 0.16 2.00 8.01 -52.49 -0.42 1.58 14 LS Contribution 231.22 15.07 3.48 3.48 Total: -1.00 -26.53 231.22 -7.16 -33.69 By element: Atomic # 1 Polarization: -3.15 SS G_CDS: -1.23 Total: -4.38 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -1.68 Total: -19.81 kcal Atomic # 7 Polarization: -22.59 SS G_CDS: 0.89 Total: -21.70 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -1.12 Total: -7.44 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -2.49 Total: 1.24 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -26.53 -7.16 -33.69 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535849314.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.532 kcal (2) G-P(sol) polarization free energy of solvation -26.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds