Wall clock time and date at job start Mon Mar 30 2020 02:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.33386 * 125.20529 * 89.71611 * 10 9 7 12 12 C 1.38420 * 114.92109 * 179.79420 * 11 10 9 13 13 C 1.33389 * 114.92289 * 0.50006 * 12 11 10 14 14 N 1.48038 * 125.20850 * 179.76481 * 13 12 11 15 15 O 1.21795 * 119.99806 * 359.97438 * 14 13 12 16 16 O 1.21802 * 120.00158 * 179.97438 * 14 13 12 17 17 S 1.75883 * 125.20198 * 270.02548 * 10 9 7 18 18 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 19 19 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 20 20 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 21 21 H 1.07998 * 122.53702 * 359.97438 * 11 10 9 22 22 H 1.07999 * 122.54514 * 180.23071 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 6 2.7382 -4.2281 1.0746 12 6 3.6179 -5.2665 0.8218 13 6 3.8324 -5.5196 -0.4701 14 7 4.7307 -6.5722 -0.9960 15 8 5.3446 -7.2892 -0.2263 16 8 4.8559 -6.7213 -2.1983 17 16 2.8841 -4.4117 -1.4535 18 1 -0.4849 0.8401 0.0041 19 1 0.6280 -2.5591 0.8866 20 1 0.6206 -2.5548 -0.8933 21 1 2.4802 -3.9159 2.0758 22 1 4.0977 -5.8265 1.6108 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535849314.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:48 Heat of formation + Delta-G solvation = 2.510370 kcal Electronic energy + Delta-G solvation = -11329.510684 eV Core-core repulsion = 8978.841542 eV Total energy + Delta-G solvation = -2350.669142 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.17131 -39.32891 -37.68107 -35.55126 -33.02009 -30.04539 -27.13726 -25.08840 -23.88031 -21.49529 -20.28283 -18.96741 -18.74767 -18.56352 -17.46723 -16.64329 -15.68571 -14.82472 -14.36767 -14.06642 -13.74406 -13.22635 -12.85142 -12.73617 -12.67048 -12.42506 -12.39217 -12.11751 -11.86645 -11.75068 -10.66719 -10.12907 -9.85410 -8.30108 -6.43704 -1.31392 -0.40056 0.15110 0.46390 0.73224 1.39377 1.42288 1.44926 1.51464 2.36647 3.04540 3.75002 3.83608 4.19130 4.57987 4.80690 4.98524 5.15547 5.18670 5.35589 5.61896 5.95505 6.44807 6.66090 7.26420 8.79241 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.059633 B = 0.007174 C = 0.007086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.425955 B = 3902.036320 C = 3950.254654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.076 3.924 10 C -0.073 4.073 11 C -0.176 4.176 12 C 0.003 3.997 13 C -0.229 4.229 14 N 0.072 4.928 15 O -0.154 6.154 16 O -0.202 6.202 17 S 0.213 5.787 18 H 0.269 0.731 19 H 0.044 0.956 20 H 0.022 0.978 21 H 0.180 0.820 22 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.798 -6.898 1.740 8.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.578 4.578 8 H 0.079 0.921 9 C 0.037 3.963 10 C -0.193 4.193 11 C -0.203 4.203 12 C -0.034 4.034 13 C -0.430 4.430 14 N 0.586 4.414 15 O -0.372 6.372 16 O -0.407 6.407 17 S 0.478 5.522 18 H 0.078 0.922 19 H 0.062 0.938 20 H 0.041 0.959 21 H 0.197 0.803 22 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.050 -6.111 0.310 7.338 hybrid contribution 0.564 0.408 1.210 1.396 sum 4.614 -5.704 1.520 7.493 Atomic orbital electron populations 1.70020 1.07454 1.28473 1.50017 1.25789 0.95703 1.02794 0.94124 0.85539 0.78372 0.78287 0.79185 1.19583 1.20656 1.19084 1.21257 0.93370 0.90395 1.52779 0.92063 1.17944 0.91712 0.88077 0.98541 1.25909 0.99532 0.98510 0.95377 1.20286 1.00739 0.97757 1.01540 1.20604 0.93541 0.94831 0.94377 1.25897 1.12318 1.04771 1.00037 1.42606 0.98767 0.99546 1.00458 1.94481 1.45049 1.42128 1.55573 1.94552 1.71249 1.76664 0.98258 1.84724 1.36921 1.23651 1.06889 0.92183 0.93822 0.95944 0.80263 0.79030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.19 13.29 21.45 0.28 -49.90 14 2 C 0.02 0.83 5.46 84.66 0.46 1.29 14 3 Si 0.96 40.50 29.54 68.60 2.03 42.53 14 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 14 5 H -0.28 -11.64 7.11 99.48 0.71 -10.94 14 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 14 7 C -0.54 -27.05 9.09 25.60 0.23 -26.81 14 8 H 0.06 3.01 7.74 -2.91 -0.02 2.99 14 9 C 0.08 3.44 5.47 29.10 0.16 3.60 14 10 C -0.07 -2.66 5.70 24.59 0.14 -2.52 14 11 C -0.18 -5.27 10.05 21.21 0.21 -5.06 14 12 C 0.00 0.09 9.81 21.22 0.21 0.30 14 13 C -0.23 -7.33 7.50 80.82 0.61 -6.72 14 14 N 0.07 2.46 4.46 -48.12 -0.21 2.24 14 15 O -0.15 -5.00 18.94 18.89 0.36 -4.64 14 16 O -0.20 -7.26 19.08 18.88 0.36 -6.90 14 17 S 0.21 7.22 23.12 -56.49 -1.31 5.91 14 18 H 0.27 13.90 8.31 -92.71 -0.77 13.13 14 19 H 0.04 2.04 8.14 -2.38 -0.02 2.02 14 20 H 0.02 1.08 8.14 -2.39 -0.02 1.06 14 21 H 0.18 4.64 8.06 -2.91 -0.02 4.62 14 22 H 0.19 3.90 8.01 -2.91 -0.02 3.88 14 Total: -1.00 -55.27 231.22 4.77 -50.50 By element: Atomic # 1 Polarization: -5.06 SS G_CDS: 1.24 Total: -3.82 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 2.02 Total: -35.92 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.07 Total: -47.66 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.72 Total: -11.54 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 7.22 SS G_CDS: -1.31 Total: 5.91 kcal Total: -55.27 4.77 -50.50 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535849314.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.012 kcal (2) G-P(sol) polarization free energy of solvation -55.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds