Wall clock time and date at job start Mon Mar 30 2020 02:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 11 11 O 1.42902 * 109.46956 * 300.00242 * 9 7 2 12 12 C 1.50698 * 109.47465 * 180.02562 * 9 7 2 13 13 C 1.34508 * 125.78879 * 264.99985 * 12 9 7 14 14 C 1.41384 * 106.84459 * 179.97438 * 13 12 9 15 15 C 1.34514 * 106.83718 * 359.97438 * 14 13 12 16 16 N 1.48039 * 125.79251 * 180.02562 * 15 14 13 17 17 O 1.21804 * 119.99379 * 359.97438 * 16 15 14 18 18 O 1.21800 * 120.00448 * 179.97438 * 16 15 14 19 19 O 1.34300 * 125.79004 * 84.68766 * 12 9 7 20 20 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 21 21 H 0.96704 * 113.99972 * 300.00325 * 11 9 7 22 22 H 1.08001 * 126.57914 * 359.97438 * 13 12 9 23 23 H 1.07993 * 126.58276 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 1 0.6241 -2.5613 -0.8770 11 8 0.4301 -2.5691 1.1798 12 6 2.2305 -3.6445 0.0182 13 6 2.6694 -4.3097 -1.0653 14 6 3.5693 -5.2974 -0.6031 15 6 3.6269 -5.1762 0.7354 16 7 4.4474 -6.0069 1.6454 17 8 5.1503 -6.8930 1.1933 18 8 4.4195 -5.8045 2.8462 19 8 2.8176 -4.1703 1.1056 20 1 -0.4850 -0.8401 -0.0004 21 1 0.9225 -2.5195 2.0105 22 1 2.3884 -4.1249 -2.0916 23 1 4.1078 -6.0114 -1.2084 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535882050.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:55 Heat of formation + Delta-G solvation = -58.637866 kcal Electronic energy + Delta-G solvation = -13816.053984 eV Core-core repulsion = 11019.980384 eV Total energy + Delta-G solvation = -2796.073600 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.052 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.46130 -43.15578 -38.27974 -37.96786 -34.80642 -34.47758 -32.51107 -29.41416 -26.90988 -24.74800 -23.47947 -22.35601 -20.83722 -19.97028 -19.73773 -19.15980 -18.40613 -17.33037 -16.21288 -15.79422 -15.37577 -15.09144 -14.48519 -14.38901 -14.27729 -13.05794 -12.70381 -12.67963 -12.57598 -12.56572 -12.03977 -11.96057 -11.59142 -10.86922 -10.72305 -10.08473 -8.77990 -6.69508 -1.30696 -0.57327 0.38630 1.10575 1.53669 1.57899 1.73877 1.79767 2.47548 2.98303 3.30487 3.41966 3.73074 3.80692 4.24870 4.42829 4.62597 4.86273 5.01967 5.35759 5.47159 5.88867 6.34304 6.36625 6.73311 7.21855 8.60078 Molecular weight = 213.05amu Principal moments of inertia in cm(-1) A = 0.046959 B = 0.007983 C = 0.007786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.123265 B = 3506.468297 C = 3595.249045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 1.115 2.885 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.662 4.662 8 H 0.051 0.949 9 C 0.278 3.722 10 H 0.095 0.905 11 O -0.581 6.581 12 C 0.076 3.924 13 C -0.225 4.225 14 C -0.036 4.036 15 C -0.049 4.049 16 N 0.076 4.924 17 O -0.103 6.103 18 O -0.204 6.204 19 O -0.173 6.173 20 H 0.274 0.726 21 H 0.373 0.627 22 H 0.202 0.798 23 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.280 -7.523 -3.558 10.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.205 4.205 3 Si 0.936 3.064 4 H -0.205 1.205 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.699 4.699 8 H 0.069 0.931 9 C 0.220 3.780 10 H 0.112 0.888 11 O -0.387 6.387 12 C 0.022 3.978 13 C -0.244 4.244 14 C -0.057 4.057 15 C -0.181 4.181 16 N 0.592 4.408 17 O -0.328 6.328 18 O -0.406 6.406 19 O -0.070 6.070 20 H 0.084 0.916 21 H 0.220 0.780 22 H 0.219 0.781 23 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.138 -5.448 -4.022 8.501 hybrid contribution 0.707 -1.899 0.832 2.191 sum 5.846 -7.347 -3.189 9.916 Atomic orbital electron populations 1.70804 1.07773 1.31707 1.43499 1.27228 0.96333 1.05933 0.90997 0.82956 0.74223 0.71244 0.78018 1.20528 1.20168 1.18973 1.22511 0.94683 0.92062 1.60674 0.93062 1.18690 0.85327 0.86379 0.87557 0.88762 1.86470 1.39297 1.96014 1.16913 1.25037 0.94359 0.94833 0.83536 1.22135 1.02501 0.98096 1.01680 1.22271 0.95776 0.98308 0.89382 1.22513 1.06612 0.99492 0.89483 1.42159 0.98790 0.99220 1.00581 1.94513 1.35310 1.22134 1.80833 1.94627 1.72664 1.75979 0.97361 1.83902 1.46967 1.38838 1.37304 0.91565 0.77989 0.78139 0.76327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.78 13.52 21.45 0.29 -50.49 14 2 C 0.00 -0.01 5.40 84.65 0.46 0.45 14 3 Si 1.11 45.99 29.90 68.60 2.05 48.05 14 4 H -0.28 -11.60 7.11 99.48 0.71 -10.90 14 5 H -0.28 -10.95 7.11 99.48 0.71 -10.24 14 6 H -0.26 -10.03 7.11 99.48 0.71 -9.33 14 7 C -0.66 -33.68 8.75 25.60 0.22 -33.46 14 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 14 9 C 0.28 12.69 2.89 29.10 0.08 12.78 14 10 H 0.10 4.30 8.00 -2.39 -0.02 4.28 14 11 O -0.58 -27.57 12.00 -144.51 -1.73 -29.30 14 12 C 0.08 2.98 6.13 24.83 0.15 3.14 14 13 C -0.23 -6.75 10.81 22.19 0.24 -6.51 14 14 C -0.04 -0.97 10.57 22.19 0.23 -0.74 14 15 C -0.05 -1.69 8.24 81.07 0.67 -1.03 14 16 N 0.08 2.65 4.46 -154.74 -0.69 1.96 14 17 O -0.10 -3.15 19.01 18.88 0.36 -2.79 14 18 O -0.20 -7.82 19.26 21.67 0.42 -7.40 14 19 O -0.17 -7.03 10.52 11.22 0.12 -6.91 14 20 H 0.27 15.58 6.48 -92.70 -0.60 14.98 14 21 H 0.37 16.47 8.93 -74.05 -0.66 15.81 14 22 H 0.20 4.69 8.06 -2.91 -0.02 4.67 14 23 H 0.22 3.71 8.06 -2.91 -0.02 3.69 14 Total: -1.00 -60.34 230.03 3.64 -56.70 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.77 Total: 15.56 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 2.06 Total: -25.37 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.40 Total: -48.53 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -0.84 Total: -46.40 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.05 Total: 48.05 kcal Total: -60.34 3.64 -56.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535882050.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.941 kcal (2) G-P(sol) polarization free energy of solvation -60.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds