Wall clock time and date at job start Mon Mar 30 2020 02:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 11 11 O 1.42895 * 109.47301 * 299.99654 * 9 7 2 12 12 C 1.50707 * 109.47014 * 179.97438 * 9 7 2 13 13 C 1.38606 * 120.41988 * 94.71945 * 12 9 7 14 14 C 1.38668 * 118.43504 * 179.78503 * 13 12 9 15 15 C 1.38194 * 119.19153 * 0.49719 * 14 13 12 16 16 N 1.31878 * 120.77775 * 359.74166 * 15 14 13 17 17 C 1.31973 * 121.70831 * 0.02562 * 16 15 14 18 18 Cl 1.73602 * 119.63362 * 179.97438 * 17 16 15 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 0.96696 * 114.00520 * 300.00121 * 11 9 7 21 21 H 1.08005 * 120.78514 * 359.97438 * 13 12 9 22 22 H 1.07999 * 120.40906 * 180.24275 * 14 13 12 23 23 H 1.07994 * 119.61045 * 179.77175 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8897 11 8 0.4291 -2.5746 1.1670 12 6 2.2304 -3.6447 0.0005 13 6 2.6116 -4.2420 1.1917 14 6 3.5117 -5.2958 1.1435 15 6 4.0038 -5.7064 -0.0808 16 7 3.6231 -5.1120 -1.1949 17 6 2.7650 -4.1094 -1.1878 18 17 2.3016 -3.3656 -2.6865 19 1 -0.4850 0.8401 0.0004 20 1 0.9208 -2.5291 1.9983 21 1 2.2147 -3.8969 2.1351 22 1 3.8276 -5.7869 2.0520 23 1 4.7079 -6.5240 -0.1259 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536160970.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:22 Heat of formation + Delta-G solvation = -25.980651 kcal Electronic energy + Delta-G solvation = -11929.521208 eV Core-core repulsion = 9575.572896 eV Total energy + Delta-G solvation = -2353.948312 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.76593 -35.99708 -35.87877 -32.29538 -31.81000 -30.82148 -26.88511 -23.81304 -22.97034 -20.93583 -17.32285 -16.87928 -16.19577 -15.36906 -14.67484 -14.08277 -13.92224 -13.31183 -12.88264 -12.67861 -11.90790 -11.31647 -11.11490 -11.03213 -10.98565 -10.53040 -10.26320 -9.69906 -9.36269 -9.03212 -8.73075 -8.49868 -8.07936 -6.09793 -4.28909 1.43175 1.68554 2.49986 3.23335 3.31977 3.36189 4.11698 4.35838 4.92536 5.14343 5.20873 5.38758 5.48958 5.67461 6.09267 6.15038 6.48876 6.55004 6.96370 7.52853 7.73604 7.98240 8.15478 8.71163 9.16506 9.45764 10.93943 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.034442 B = 0.011665 C = 0.010430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.770028 B = 2399.701073 C = 2684.042074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.083 3.917 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.559 4.559 8 H 0.057 0.943 9 C 0.259 3.741 10 H 0.083 0.917 11 O -0.557 6.557 12 C -0.101 4.101 13 C -0.071 4.071 14 C -0.172 4.172 15 C 0.084 3.916 16 N -0.485 5.485 17 C 0.170 3.830 18 Cl -0.027 7.027 19 H 0.262 0.738 20 H 0.345 0.655 21 H 0.139 0.861 22 H 0.133 0.867 23 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.291 -7.405 1.583 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.124 4.124 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.596 4.596 8 H 0.076 0.924 9 C 0.201 3.799 10 H 0.101 0.899 11 O -0.360 6.360 12 C -0.104 4.104 13 C -0.097 4.097 14 C -0.192 4.192 15 C -0.073 4.073 16 N -0.196 5.196 17 C 0.006 3.994 18 Cl 0.001 6.999 19 H 0.072 0.928 20 H 0.190 0.810 21 H 0.157 0.843 22 H 0.151 0.849 23 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.930 -7.561 0.180 9.028 hybrid contribution 0.698 1.281 1.006 1.772 sum 5.628 -6.280 1.186 8.516 Atomic orbital electron populations 1.70073 1.05907 1.26658 1.46480 1.24996 0.94723 0.99092 0.93564 0.86557 0.80291 0.83480 0.77802 1.19595 1.20688 1.20782 1.21386 0.93047 0.89968 1.55216 0.92447 1.18625 0.86759 0.87322 0.87158 0.89948 1.86657 1.37928 1.96121 1.15284 1.22208 0.98655 0.98212 0.91343 1.21370 0.95535 0.94384 0.98446 1.22091 0.99173 0.98685 0.99300 1.22389 0.98978 0.98856 0.87108 1.66914 1.12129 1.08258 1.32290 1.21424 0.96227 0.93730 0.88005 1.98380 1.89850 1.79715 1.31939 0.92780 0.81015 0.84294 0.84925 0.82835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.43 12.84 55.43 0.71 -23.72 14 2 C 0.08 2.25 5.40 -17.82 -0.10 2.15 14 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 14 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 14 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 14 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 14 7 C -0.56 -14.82 8.75 -34.44 -0.30 -15.12 14 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 14 9 C 0.26 6.41 2.59 -29.03 -0.08 6.34 14 10 H 0.08 2.24 7.14 -51.93 -0.37 1.87 14 11 O -0.56 -13.66 12.40 -35.23 -0.44 -14.10 14 12 C -0.10 -2.14 5.02 -104.44 -0.52 -2.67 14 13 C -0.07 -1.25 9.41 -39.29 -0.37 -1.62 14 14 C -0.17 -2.52 10.11 -39.44 -0.40 -2.92 14 15 C 0.08 1.29 11.18 -17.55 -0.20 1.10 14 16 N -0.48 -9.22 10.34 -10.36 -0.11 -9.32 14 17 C 0.17 3.55 7.27 -17.45 -0.13 3.42 14 18 Cl -0.03 -0.56 27.57 -51.86 -1.43 -1.99 14 19 H 0.26 7.08 8.31 -40.82 -0.34 6.74 14 20 H 0.35 7.24 7.38 45.56 0.34 7.57 14 21 H 0.14 2.15 6.53 -52.48 -0.34 1.81 14 22 H 0.13 1.42 8.06 -52.49 -0.42 1.00 14 23 H 0.15 1.76 8.06 -52.49 -0.42 1.34 14 LS Contribution 226.94 15.07 3.42 3.42 Total: -1.00 -30.20 226.94 -5.71 -35.91 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -0.76 Total: 3.32 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.09 Total: -9.32 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.60 Total: -33.04 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.44 Total: -14.10 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.43 Total: -1.99 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.20 -5.71 -35.91 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536160970.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.933 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds