Wall clock time and date at job start Mon Mar 30 2020 02:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48502 * 109.46972 * 239.99418 * 3 2 1 5 5 H 1.48501 * 109.47226 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47266 * 119.99538 * 3 2 1 7 7 C 1.40051 * 120.00545 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.46380 * 119.99696 * 0.02562 * 7 2 1 10 10 O 1.21690 * 119.99903 * 359.97438 * 9 7 2 11 11 N 1.34768 * 119.99874 * 179.97438 * 9 7 2 12 12 C 1.46501 * 119.99906 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47313 * 155.00357 * 12 11 9 14 14 C 1.52998 * 109.47429 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46788 * 299.99799 * 14 13 12 16 16 O 1.42903 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47329 * 59.99953 * 15 14 13 18 18 C 1.52998 * 109.46901 * 299.99578 * 17 15 14 19 19 H 0.96997 * 120.00200 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00606 * 0.02562 * 11 9 7 21 21 H 1.08997 * 109.47324 * 34.99816 * 12 11 9 22 22 H 1.08997 * 109.47366 * 59.99485 * 13 12 11 23 23 H 1.09009 * 109.46785 * 299.99754 * 13 12 11 24 24 H 1.08997 * 109.47384 * 179.97438 * 14 13 12 25 25 H 1.08997 * 109.47329 * 59.99386 * 14 13 12 26 26 H 1.09008 * 109.47201 * 299.99563 * 15 14 13 27 27 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 28 28 H 1.08997 * 109.47215 * 60.00152 * 17 15 14 29 29 H 1.08999 * 109.47164 * 180.02562 * 17 15 14 30 30 H 1.08997 * 109.47655 * 300.00305 * 18 17 15 31 31 H 1.09005 * 109.46908 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6966 1.2126 7 6 2.0071 -1.2128 0.0005 8 1 3.0871 -1.2127 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4806 0.0005 11 7 1.9491 -3.6476 0.0005 12 6 1.2167 -4.9164 0.0000 13 6 2.0942 -6.0116 -0.6095 14 6 1.3290 -7.3365 -0.6106 15 6 0.9641 -7.7159 0.8259 16 8 0.2499 -8.9537 0.8250 17 6 0.0866 -6.6207 1.4355 18 6 0.8518 -5.2958 1.4367 19 1 -0.4850 0.8400 -0.0004 20 1 2.9191 -3.6477 0.0009 21 1 0.3062 -4.8101 -0.5897 22 1 3.0046 -6.1179 -0.0197 23 1 2.3538 -5.7415 -1.6331 24 1 1.9540 -8.1166 -1.0452 25 1 0.4188 -7.2299 -1.2006 26 1 1.8744 -7.8226 1.4160 27 1 -0.0144 -9.2560 1.7047 28 1 -0.8237 -6.5141 0.8455 29 1 -0.1730 -6.8908 2.4590 30 1 1.7621 -5.4024 2.0266 31 1 0.2265 -4.5155 1.8705 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019802244.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:50 Heat of formation + Delta-G solvation = -114.366549 kcal Electronic energy + Delta-G solvation = -14396.227516 eV Core-core repulsion = 11869.403528 eV Total energy + Delta-G solvation = -2526.823988 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.02066 -37.09484 -35.23081 -32.61855 -31.84394 -30.56774 -28.04751 -25.81021 -22.50224 -21.89701 -19.76642 -19.43791 -17.27491 -17.02420 -15.50921 -15.30944 -14.43572 -14.36141 -13.97958 -13.65493 -12.88879 -12.44878 -12.29394 -12.00600 -11.89180 -11.61329 -11.22594 -10.99440 -10.87152 -10.82096 -10.44357 -10.25600 -10.15411 -10.02473 -9.58661 -8.83473 -7.59161 -7.47096 -6.16764 -4.62688 3.16347 3.21207 3.23074 4.10135 4.22536 4.59915 4.80705 4.89096 5.01155 5.35130 5.41730 5.51105 5.62621 5.69669 5.79251 5.95007 6.01192 6.14565 6.19606 6.31279 6.37576 6.47703 6.78239 6.87490 7.44499 7.65694 7.96023 8.14552 8.35339 9.03928 9.57200 10.62209 10.81218 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.076601 B = 0.006467 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.440675 B = 4328.319156 C = 4485.374768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.555 3.445 10 O -0.580 6.580 11 N -0.764 5.764 12 C 0.154 3.846 13 C -0.122 4.122 14 C -0.107 4.107 15 C 0.104 3.896 16 O -0.573 6.573 17 C -0.147 4.147 18 C -0.125 4.125 19 H 0.268 0.732 20 H 0.379 0.621 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.374 0.626 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 -11.246 2.111 12.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.417 5.417 12 C 0.048 3.952 13 C -0.160 4.160 14 C -0.145 4.145 15 C 0.046 3.954 16 O -0.378 6.378 17 C -0.185 4.185 18 C -0.164 4.164 19 H 0.079 0.921 20 H 0.210 0.790 21 H 0.094 0.906 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.221 0.779 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.254 -11.058 1.451 11.618 hybrid contribution 0.858 0.807 0.710 1.375 sum 4.112 -10.251 2.161 11.254 Atomic orbital electron populations 1.70008 1.07043 1.27315 1.35401 1.25699 0.94599 1.00240 0.92631 0.86450 0.79822 0.81130 0.79408 1.19311 1.20580 1.19327 1.20870 0.93532 0.89519 1.54510 0.91553 1.18204 0.87232 0.82484 0.76182 1.90594 1.14056 1.86825 1.54832 1.46183 1.08396 1.04776 1.82380 1.20504 0.95849 0.84243 0.94632 1.21772 0.98597 0.93919 1.01733 1.21406 1.01027 0.96870 0.95172 1.21893 0.93321 0.82895 0.97312 1.86491 1.77555 1.39615 1.34135 1.22224 0.99885 0.95865 1.00569 1.21907 0.99848 0.95924 0.98748 0.92093 0.78995 0.90638 0.91891 0.91031 0.91528 0.91103 0.92968 0.77923 0.91081 0.92250 0.92616 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.20 11.83 55.55 0.66 -22.54 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.20 29.56 -169.99 -5.02 15.18 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.55 -15.51 9.54 -35.63 -0.34 -15.85 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 9 C 0.56 15.77 7.71 -12.99 -0.10 15.67 16 10 O -0.58 -18.75 14.68 5.20 0.08 -18.67 16 11 N -0.76 -16.97 5.07 -55.21 -0.28 -17.25 16 12 C 0.15 2.94 2.45 -67.93 -0.17 2.77 16 13 C -0.12 -1.78 5.39 -26.73 -0.14 -1.93 16 14 C -0.11 -1.44 5.57 -26.73 -0.15 -1.59 16 15 C 0.10 1.34 3.47 -26.73 -0.09 1.25 16 16 O -0.57 -7.08 13.32 -35.23 -0.47 -7.55 16 17 C -0.15 -2.10 5.55 -26.73 -0.15 -2.25 16 18 C -0.13 -2.19 5.50 -26.73 -0.15 -2.33 16 19 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 20 H 0.38 7.40 8.58 -40.82 -0.35 7.05 16 21 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.37 3.01 9.08 45.56 0.41 3.42 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 261.12 15.07 3.94 3.94 Total: -1.00 -34.27 261.12 -6.17 -40.44 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -3.68 Total: 8.34 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.38 Total: -1.88 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.38 Total: -39.79 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.39 Total: -26.22 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.27 -6.17 -40.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019802244.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.924 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds