Wall clock time and date at job start Mon Mar 30 2020 02:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48502 * 109.46972 * 239.99418 * 3 2 1 5 5 H 1.48501 * 109.47226 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47266 * 119.99538 * 3 2 1 7 7 C 1.40051 * 120.00545 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.46380 * 119.99696 * 0.02562 * 7 2 1 10 10 O 1.21690 * 119.99903 * 359.97438 * 9 7 2 11 11 N 1.34768 * 119.99874 * 179.97438 * 9 7 2 12 12 C 1.46501 * 119.99906 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47313 * 155.00357 * 12 11 9 14 14 C 1.52998 * 109.47429 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46788 * 299.99799 * 14 13 12 16 16 O 1.42903 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47329 * 59.99953 * 15 14 13 18 18 C 1.52998 * 109.46901 * 299.99578 * 17 15 14 19 19 H 0.96997 * 120.00200 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00606 * 0.02562 * 11 9 7 21 21 H 1.08997 * 109.47324 * 34.99816 * 12 11 9 22 22 H 1.08997 * 109.47366 * 59.99485 * 13 12 11 23 23 H 1.09009 * 109.46785 * 299.99754 * 13 12 11 24 24 H 1.08997 * 109.47384 * 179.97438 * 14 13 12 25 25 H 1.08997 * 109.47329 * 59.99386 * 14 13 12 26 26 H 1.09008 * 109.47201 * 299.99563 * 15 14 13 27 27 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 28 28 H 1.08997 * 109.47215 * 60.00152 * 17 15 14 29 29 H 1.08999 * 109.47164 * 180.02562 * 17 15 14 30 30 H 1.08997 * 109.47655 * 300.00305 * 18 17 15 31 31 H 1.09005 * 109.46908 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6966 1.2126 7 6 2.0071 -1.2128 0.0005 8 1 3.0871 -1.2127 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4806 0.0005 11 7 1.9491 -3.6476 0.0005 12 6 1.2167 -4.9164 0.0000 13 6 2.0942 -6.0116 -0.6095 14 6 1.3290 -7.3365 -0.6106 15 6 0.9641 -7.7159 0.8259 16 8 0.2499 -8.9537 0.8250 17 6 0.0866 -6.6207 1.4355 18 6 0.8518 -5.2958 1.4367 19 1 -0.4850 0.8400 -0.0004 20 1 2.9191 -3.6477 0.0009 21 1 0.3062 -4.8101 -0.5897 22 1 3.0046 -6.1179 -0.0197 23 1 2.3538 -5.7415 -1.6331 24 1 1.9540 -8.1166 -1.0452 25 1 0.4188 -7.2299 -1.2006 26 1 1.8744 -7.8226 1.4160 27 1 -0.0144 -9.2560 1.7047 28 1 -0.8237 -6.5141 0.8455 29 1 -0.1730 -6.8908 2.4590 30 1 1.7621 -5.4024 2.0266 31 1 0.2265 -4.5155 1.8705 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019802244.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:50 Heat of formation + Delta-G solvation = -142.323999 kcal Electronic energy + Delta-G solvation = -14397.439842 eV Core-core repulsion = 11869.403528 eV Total energy + Delta-G solvation = -2528.036314 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.42498 -38.84297 -36.65296 -34.66560 -33.69321 -31.80228 -29.67966 -27.75225 -23.75149 -23.36607 -21.43360 -21.02153 -19.13031 -18.13659 -17.44282 -16.92356 -16.08714 -15.71930 -15.43071 -15.10243 -14.43731 -14.29654 -14.00455 -13.30729 -13.19039 -13.15085 -12.83138 -12.67731 -12.57259 -12.25670 -12.10703 -12.03236 -11.59766 -11.18016 -10.91308 -10.73215 -9.83380 -9.42522 -8.28104 -6.85184 1.39951 1.43671 1.55299 2.24943 2.48443 3.02988 3.40118 3.60814 3.70953 3.85221 4.16102 4.23130 4.29848 4.39607 4.48590 4.51612 4.77834 4.97160 5.03619 5.06538 5.15990 5.17377 5.31899 5.37693 5.44535 5.90025 6.26747 6.33329 6.87329 6.92072 7.59518 8.51833 8.69172 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.076601 B = 0.006467 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.440675 B = 4328.319156 C = 4485.374768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.576 4.576 8 H 0.088 0.912 9 C 0.538 3.462 10 O -0.633 6.633 11 N -0.751 5.751 12 C 0.149 3.851 13 C -0.108 4.108 14 C -0.107 4.107 15 C 0.113 3.887 16 O -0.582 6.582 17 C -0.140 4.140 18 C -0.118 4.118 19 H 0.274 0.726 20 H 0.395 0.605 21 H 0.032 0.968 22 H 0.090 0.910 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.394 0.606 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -11.990 2.564 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.613 4.613 8 H 0.106 0.894 9 C 0.342 3.658 10 O -0.520 6.520 11 N -0.404 5.404 12 C 0.043 3.957 13 C -0.146 4.146 14 C -0.145 4.145 15 C 0.054 3.946 16 O -0.391 6.391 17 C -0.179 4.179 18 C -0.157 4.157 19 H 0.084 0.916 20 H 0.229 0.771 21 H 0.050 0.950 22 H 0.108 0.892 23 H 0.091 0.909 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.244 0.756 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.737 -11.867 1.916 13.320 hybrid contribution 0.062 0.951 0.579 1.115 sum 5.799 -10.917 2.495 12.610 Atomic orbital electron populations 1.70191 1.09604 1.28938 1.36675 1.26994 0.95500 1.05030 0.91182 0.85064 0.78170 0.74679 0.80308 1.17797 1.20028 1.17761 1.21445 0.94771 0.90208 1.54850 0.89382 1.18603 0.86853 0.84471 0.75887 1.90550 1.16293 1.87978 1.57163 1.45862 1.09166 1.04583 1.80832 1.20692 0.95036 0.84323 0.95611 1.21655 0.98588 0.92574 1.01778 1.21407 1.00575 0.96614 0.95886 1.21768 0.93670 0.82375 0.96770 1.86456 1.77613 1.38853 1.36160 1.22181 0.98954 0.94791 1.01964 1.21774 1.00271 0.96309 0.97359 0.91649 0.77127 0.94953 0.89183 0.90908 0.89190 0.92835 0.90532 0.75601 0.93278 0.89856 0.90451 0.95611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.39 11.83 21.84 0.26 -51.13 16 2 C 0.03 1.57 5.50 85.31 0.47 2.03 16 3 Si 1.00 41.23 29.56 68.60 2.03 43.26 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 7 C -0.58 -32.99 9.54 24.83 0.24 -32.75 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 9 C 0.54 31.66 7.71 86.36 0.67 32.32 16 10 O -0.63 -43.24 14.68 -4.32 -0.06 -43.30 16 11 N -0.75 -33.85 5.07 -446.82 -2.27 -36.11 16 12 C 0.15 5.78 2.45 44.99 0.11 5.89 16 13 C -0.11 -2.95 5.39 30.59 0.16 -2.79 16 14 C -0.11 -2.64 5.57 30.59 0.17 -2.47 16 15 C 0.11 2.58 3.47 30.59 0.11 2.68 16 16 O -0.58 -12.64 13.32 -148.98 -1.98 -14.62 16 17 C -0.14 -3.88 5.55 30.59 0.17 -3.72 16 18 C -0.12 -4.16 5.50 30.60 0.17 -3.99 16 19 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 20 H 0.39 15.08 8.58 -92.71 -0.80 14.28 16 21 H 0.03 1.53 7.58 -2.39 -0.02 1.51 16 22 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 24 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.08 1.45 8.14 -2.38 -0.02 1.44 16 27 H 0.39 5.01 9.08 -74.06 -0.67 4.34 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 31 H 0.02 1.12 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -78.21 261.12 -0.10 -78.31 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -0.33 Total: 26.37 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 2.26 Total: -2.78 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -2.01 Total: -87.24 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: -2.05 Total: -57.92 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -78.21 -0.10 -78.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019802244.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.013 kcal (2) G-P(sol) polarization free energy of solvation -78.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds