Wall clock time and date at job start Mon Mar 30 2020 02:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86793 * 120.00166 * 2 1 4 4 H 1.48502 * 109.47413 * 85.01350 * 3 2 1 5 5 H 1.48504 * 109.47351 * 205.01570 * 3 2 1 6 6 H 1.48496 * 109.47104 * 325.01719 * 3 2 1 7 7 C 1.40055 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00224 * 186.79717 * 7 2 1 9 9 C 1.46378 * 120.00222 * 6.79258 * 7 2 1 10 10 O 1.21692 * 119.99745 * 6.75135 * 9 7 2 11 11 N 1.34775 * 120.00292 * 186.75319 * 9 7 2 12 12 C 1.46501 * 119.99911 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46961 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47075 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.27042 * 55.63980 * 14 13 12 16 16 C 1.54950 * 110.31038 * 177.83452 * 14 13 12 17 17 C 1.55298 * 100.94173 * 155.35978 * 16 14 13 18 18 C 1.54374 * 102.25665 * 325.86851 * 17 16 14 19 19 O 1.43245 * 107.58765 * 21.35238 * 18 17 16 20 20 H 0.96994 * 120.00068 * 0.02562 * 1 2 3 21 21 H 0.97003 * 120.00008 * 359.97438 * 11 9 7 22 22 H 1.09003 * 109.46524 * 299.99206 * 12 11 9 23 23 H 1.08997 * 109.47434 * 59.99704 * 12 11 9 24 24 H 1.09003 * 109.46977 * 300.00073 * 13 12 11 25 25 H 1.09002 * 109.47377 * 59.99333 * 13 12 11 26 26 H 1.09004 * 111.12309 * 273.27899 * 16 14 13 27 27 H 1.09000 * 111.12541 * 37.44012 * 16 14 13 28 28 H 1.08996 * 110.84736 * 207.67033 * 17 16 14 29 29 H 1.09006 * 111.02170 * 84.13664 * 17 16 14 30 30 H 1.09007 * 109.82981 * 261.84626 * 18 17 16 31 31 H 1.09001 * 109.90939 * 140.91299 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 2.3828 2.1072 1.3948 5 1 3.5870 1.4120 -0.5921 6 1 1.4948 2.6199 -0.8027 7 6 2.0069 -1.2129 0.0005 8 1 3.0812 -1.2162 0.1112 9 6 1.2828 -2.4762 -0.1488 10 8 0.0913 -2.4690 -0.3961 11 7 1.9356 -3.6474 -0.0125 12 6 1.2109 -4.9118 -0.1626 13 6 2.1776 -6.0806 0.0384 14 6 1.4207 -7.4010 -0.1177 15 1 0.9174 -7.4358 -1.0840 16 6 2.3928 -8.5987 0.0283 17 6 1.4162 -9.7172 0.4832 18 6 0.3971 -8.9345 1.3387 19 8 0.4687 -7.5587 0.9463 20 1 -0.4850 0.8400 -0.0004 21 1 2.8855 -3.6532 0.1842 22 1 0.4160 -4.9653 0.5813 23 1 0.7782 -4.9662 -1.1615 24 1 2.9724 -6.0268 -0.7057 25 1 2.6108 -6.0263 1.0371 26 1 2.8568 -8.8467 -0.9264 27 1 3.1470 -8.4019 0.7902 28 1 1.9348 -10.4641 1.0842 29 1 0.9278 -10.1821 -0.3733 30 1 0.6492 -9.0314 2.3948 31 1 -0.6079 -9.3177 1.1619 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044510722.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:19 Heat of formation + Delta-G solvation = -101.558138 kcal Electronic energy + Delta-G solvation = -13924.780282 eV Core-core repulsion = 11398.511709 eV Total energy + Delta-G solvation = -2526.268574 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.45440 -37.17817 -34.08066 -32.39274 -32.14964 -30.97323 -27.51721 -25.80854 -22.88933 -21.62086 -20.71881 -19.52409 -17.14184 -16.83639 -15.89587 -15.23229 -14.87902 -14.26324 -14.07811 -13.79648 -13.32590 -13.02277 -12.33781 -12.06356 -11.81180 -11.52215 -11.39805 -11.11793 -11.00967 -10.89951 -10.62646 -10.44332 -10.34182 -10.14623 -9.44473 -8.77783 -7.52040 -7.38372 -6.14496 -4.55824 3.17896 3.24924 3.29299 3.83383 4.15893 4.39254 4.58640 4.66401 4.78033 4.99769 5.15874 5.21395 5.46430 5.49625 5.61180 5.64794 5.74065 5.79862 5.88216 5.91383 6.04949 6.17780 6.69111 6.82230 7.12526 7.49882 8.02486 8.20395 8.41485 9.09290 9.63858 10.67842 10.86729 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.084495 B = 0.005270 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.302828 B = 5311.643223 C = 5507.177744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.265 1.265 6 H -0.279 1.279 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.583 6.583 11 N -0.769 5.769 12 C 0.135 3.865 13 C -0.127 4.127 14 C 0.084 3.916 15 H 0.072 0.928 16 C -0.151 4.151 17 C -0.157 4.157 18 C 0.049 3.951 19 O -0.373 6.373 20 H 0.268 0.732 21 H 0.379 0.621 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.990 -15.681 0.801 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.204 1.204 7 C -0.586 4.586 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.466 6.466 11 N -0.425 5.425 12 C 0.010 3.990 13 C -0.165 4.165 14 C 0.026 3.974 15 H 0.090 0.910 16 C -0.189 4.189 17 C -0.194 4.194 18 C -0.028 4.028 19 O -0.293 6.293 20 H 0.079 0.921 21 H 0.210 0.790 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.788 -15.408 0.706 16.150 hybrid contribution 1.016 0.505 0.037 1.136 sum 5.804 -14.903 0.743 16.011 Atomic orbital electron populations 1.69997 1.07143 1.27264 1.35553 1.25693 0.94557 1.00257 0.92555 0.86377 0.80294 0.81585 0.78574 1.19896 1.18877 1.20421 1.20891 0.94165 0.89684 1.53843 0.91441 1.18216 0.86741 0.82456 0.76657 1.90588 1.15919 1.86979 1.53145 1.46137 1.11515 1.05176 1.79637 1.20812 0.94401 0.83349 1.00406 1.21942 0.98415 0.93377 1.02727 1.22966 0.88670 0.94618 0.91100 0.90976 1.23316 0.98376 0.94654 1.02569 1.23111 0.97361 0.98511 1.00438 1.23090 0.98839 0.82280 0.98551 1.88524 1.61929 1.24868 1.53964 0.92123 0.79037 0.92669 0.93755 0.90598 0.91045 0.89969 0.90216 0.90290 0.90654 0.91593 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.87 11.91 55.55 0.66 -23.21 16 2 C 0.09 2.56 5.48 -17.37 -0.10 2.46 16 3 Si 0.91 20.62 29.56 -169.99 -5.03 15.59 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.55 -16.07 9.53 -35.63 -0.34 -16.41 16 8 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 9 C 0.56 16.64 7.72 -12.99 -0.10 16.54 16 10 O -0.58 -19.89 15.11 5.20 0.08 -19.81 16 11 N -0.77 -18.23 5.55 -61.72 -0.34 -18.57 16 12 C 0.14 2.81 5.59 -4.04 -0.02 2.79 16 13 C -0.13 -1.89 5.07 -26.73 -0.14 -2.03 16 14 C 0.08 1.12 3.43 -25.70 -0.09 1.03 16 15 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 16 C -0.15 -1.48 6.57 -24.48 -0.16 -1.64 16 17 C -0.16 -1.36 7.02 -24.79 -0.17 -1.54 16 18 C 0.05 0.55 7.79 37.88 0.30 0.84 16 19 O -0.37 -5.75 10.69 -35.23 -0.38 -6.13 16 20 H 0.27 7.50 8.29 -40.82 -0.34 7.16 16 21 H 0.38 7.75 8.45 -40.82 -0.35 7.41 16 22 H 0.05 1.29 7.91 -51.93 -0.41 0.88 16 23 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 266.19 15.07 4.01 4.01 Total: -1.00 -36.10 266.19 -6.34 -42.44 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.53 Total: 3.61 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -0.82 Total: 2.06 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.32 Total: -41.78 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.30 Total: -25.94 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -36.10 -6.34 -42.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510722.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.117 kcal (2) G-P(sol) polarization free energy of solvation -36.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds