Wall clock time and date at job start Mon Mar 30 2020 02:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86793 * 120.00166 * 2 1 4 4 H 1.48502 * 109.47413 * 85.01350 * 3 2 1 5 5 H 1.48504 * 109.47351 * 205.01570 * 3 2 1 6 6 H 1.48496 * 109.47104 * 325.01719 * 3 2 1 7 7 C 1.40055 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00224 * 186.79717 * 7 2 1 9 9 C 1.46378 * 120.00222 * 6.79258 * 7 2 1 10 10 O 1.21692 * 119.99745 * 6.75135 * 9 7 2 11 11 N 1.34775 * 120.00292 * 186.75319 * 9 7 2 12 12 C 1.46501 * 119.99911 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46961 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47075 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.27042 * 55.63980 * 14 13 12 16 16 C 1.54950 * 110.31038 * 177.83452 * 14 13 12 17 17 C 1.55298 * 100.94173 * 155.35978 * 16 14 13 18 18 C 1.54374 * 102.25665 * 325.86851 * 17 16 14 19 19 O 1.43245 * 107.58765 * 21.35238 * 18 17 16 20 20 H 0.96994 * 120.00068 * 0.02562 * 1 2 3 21 21 H 0.97003 * 120.00008 * 359.97438 * 11 9 7 22 22 H 1.09003 * 109.46524 * 299.99206 * 12 11 9 23 23 H 1.08997 * 109.47434 * 59.99704 * 12 11 9 24 24 H 1.09003 * 109.46977 * 300.00073 * 13 12 11 25 25 H 1.09002 * 109.47377 * 59.99333 * 13 12 11 26 26 H 1.09004 * 111.12309 * 273.27899 * 16 14 13 27 27 H 1.09000 * 111.12541 * 37.44012 * 16 14 13 28 28 H 1.08996 * 110.84736 * 207.67033 * 17 16 14 29 29 H 1.09006 * 111.02170 * 84.13664 * 17 16 14 30 30 H 1.09007 * 109.82981 * 261.84626 * 18 17 16 31 31 H 1.09001 * 109.90939 * 140.91299 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 2.3828 2.1072 1.3948 5 1 3.5870 1.4120 -0.5921 6 1 1.4948 2.6199 -0.8027 7 6 2.0069 -1.2129 0.0005 8 1 3.0812 -1.2162 0.1112 9 6 1.2828 -2.4762 -0.1488 10 8 0.0913 -2.4690 -0.3961 11 7 1.9356 -3.6474 -0.0125 12 6 1.2109 -4.9118 -0.1626 13 6 2.1776 -6.0806 0.0384 14 6 1.4207 -7.4010 -0.1177 15 1 0.9174 -7.4358 -1.0840 16 6 2.3928 -8.5987 0.0283 17 6 1.4162 -9.7172 0.4832 18 6 0.3971 -8.9345 1.3387 19 8 0.4687 -7.5587 0.9463 20 1 -0.4850 0.8400 -0.0004 21 1 2.8855 -3.6532 0.1842 22 1 0.4160 -4.9653 0.5813 23 1 0.7782 -4.9662 -1.1615 24 1 2.9724 -6.0268 -0.7057 25 1 2.6108 -6.0263 1.0371 26 1 2.8568 -8.8467 -0.9264 27 1 3.1470 -8.4019 0.7902 28 1 1.9348 -10.4641 1.0842 29 1 0.9278 -10.1821 -0.3733 30 1 0.6492 -9.0314 2.3948 31 1 -0.6079 -9.3177 1.1619 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044510722.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:18 Heat of formation + Delta-G solvation = -129.584759 kcal Electronic energy + Delta-G solvation = -13925.995608 eV Core-core repulsion = 11398.511709 eV Total energy + Delta-G solvation = -2527.483899 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46299 -39.33280 -35.89997 -34.57312 -33.14130 -32.48214 -29.16107 -27.58986 -24.29432 -22.50148 -21.90589 -21.61306 -19.18737 -17.86882 -17.46134 -16.88148 -16.09379 -16.01630 -15.88074 -15.34609 -14.52161 -14.34709 -13.95499 -13.83878 -13.14077 -12.84850 -12.75996 -12.64295 -12.61831 -12.39566 -12.03392 -11.90138 -11.74085 -11.64257 -10.92597 -10.46189 -9.88258 -9.50095 -8.32387 -6.85781 1.40395 1.42723 1.59178 2.25454 2.46218 2.91501 3.08290 3.60267 3.62827 3.83967 4.02701 4.14110 4.20729 4.32096 4.42565 4.60563 4.76934 4.84499 4.86860 4.94710 5.03058 5.15752 5.17778 5.31619 5.31721 5.87133 6.17041 6.23903 6.26799 6.85785 7.55745 8.48298 8.66435 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.084495 B = 0.005270 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.302828 B = 5311.643223 C = 5507.177744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.027 3.973 3 Si 1.003 2.997 4 H -0.260 1.260 5 H -0.247 1.247 6 H -0.273 1.273 7 C -0.576 4.576 8 H 0.091 0.909 9 C 0.534 3.466 10 O -0.639 6.639 11 N -0.755 5.755 12 C 0.138 3.862 13 C -0.111 4.111 14 C 0.076 3.924 15 H 0.068 0.932 16 C -0.142 4.142 17 C -0.147 4.147 18 C 0.037 3.963 19 O -0.414 6.414 20 H 0.276 0.724 21 H 0.397 0.603 22 H 0.020 0.980 23 H 0.028 0.972 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.608 -16.147 0.807 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.184 1.184 5 H -0.170 1.170 6 H -0.198 1.198 7 C -0.612 4.612 8 H 0.109 0.891 9 C 0.338 3.662 10 O -0.527 6.527 11 N -0.410 5.410 12 C 0.014 3.986 13 C -0.149 4.149 14 C 0.018 3.982 15 H 0.086 0.914 16 C -0.179 4.179 17 C -0.185 4.185 18 C -0.039 4.039 19 O -0.335 6.335 20 H 0.085 0.915 21 H 0.231 0.769 22 H 0.038 0.962 23 H 0.047 0.953 24 H 0.121 0.879 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.460 -15.936 0.725 17.610 hybrid contribution 0.146 0.582 0.060 0.603 sum 7.606 -15.354 0.785 17.152 Atomic orbital electron populations 1.70170 1.09821 1.29144 1.36469 1.27058 0.95505 1.05228 0.90989 0.84938 0.78865 0.74711 0.79301 1.18449 1.16988 1.19814 1.21456 0.95461 0.90171 1.54159 0.89063 1.18738 0.86404 0.84575 0.76475 1.90538 1.18256 1.88147 1.55752 1.45826 1.12343 1.04803 1.78028 1.20866 0.95098 0.84366 0.98315 1.21858 0.97591 0.91563 1.03850 1.23069 0.89378 0.95174 0.90553 0.91402 1.23288 0.97752 0.92835 1.04042 1.23109 0.96441 0.98300 1.00625 1.23341 1.00152 0.80939 0.99518 1.88492 1.62800 1.27580 1.54599 0.91464 0.76903 0.96170 0.95331 0.87919 0.90503 0.87772 0.89541 0.87929 0.89665 0.90948 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -52.47 11.91 21.84 0.26 -52.21 16 2 C 0.03 1.55 5.48 85.31 0.47 2.02 16 3 Si 1.00 41.81 29.56 68.60 2.03 43.84 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.58 -33.85 9.53 24.83 0.24 -33.62 16 8 H 0.09 4.74 7.86 -2.91 -0.02 4.72 16 9 C 0.53 32.91 7.72 86.36 0.67 33.58 16 10 O -0.64 -45.69 15.11 -4.32 -0.07 -45.76 16 11 N -0.76 -36.33 5.55 -467.39 -2.59 -38.92 16 12 C 0.14 5.93 5.59 86.38 0.48 6.41 16 13 C -0.11 -3.20 5.07 30.59 0.16 -3.05 16 14 C 0.08 1.95 3.43 31.26 0.11 2.05 16 15 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 16 C -0.14 -2.33 6.57 32.05 0.21 -2.12 16 17 C -0.15 -2.14 7.02 31.85 0.22 -1.92 16 18 C 0.04 0.77 7.79 72.45 0.56 1.34 16 19 O -0.41 -12.84 10.69 -148.98 -1.59 -14.43 16 20 H 0.28 15.75 8.29 -92.71 -0.77 14.98 16 21 H 0.40 15.97 8.45 -92.71 -0.78 15.18 16 22 H 0.02 0.99 7.91 -2.39 -0.02 0.97 16 23 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.09 1.33 8.06 -2.39 -0.02 1.31 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -82.09 266.19 1.48 -80.61 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.33 Total: 22.18 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 3.11 Total: 4.70 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -2.33 Total: -91.13 kcal Atomic # 8 Polarization: -58.53 SS G_CDS: -1.66 Total: -60.19 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -82.09 1.48 -80.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510722.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.976 kcal (2) G-P(sol) polarization free energy of solvation -82.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds