Wall clock time and date at job start Mon Mar 30 2020 02:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48500 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46870 * 299.99647 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.99714 * 3 2 1 7 7 C 1.40050 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00085 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99840 * 0.02562 * 7 2 1 10 10 O 1.21682 * 120.00159 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99597 * 179.97438 * 9 7 2 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 12 11 15 15 H 1.09005 * 109.82439 * 305.56435 * 14 13 12 16 16 C 1.54379 * 109.83367 * 184.58563 * 14 13 12 17 17 C 1.55302 * 102.25633 * 219.12953 * 16 14 13 18 18 C 1.54945 * 100.94043 * 34.12846 * 17 16 14 19 19 O 1.43238 * 109.83255 * 66.44927 * 14 13 12 20 20 H 0.96999 * 120.00129 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00676 * 359.97438 * 11 9 7 22 22 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 23 23 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 24 24 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 25 25 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 26 26 H 1.09004 * 110.84834 * 337.32138 * 16 14 13 27 27 H 1.08998 * 110.84865 * 100.93651 * 16 14 13 28 28 H 1.08999 * 111.12353 * 276.21044 * 17 16 14 29 29 H 1.08997 * 111.16322 * 152.07123 * 17 16 14 30 30 H 1.09002 * 110.31002 * 204.63882 * 18 17 16 31 31 H 1.09008 * 110.30527 * 82.47529 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7008 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9165 0.0000 13 6 2.2108 -6.0794 0.0007 14 6 1.4458 -7.4044 -0.0005 15 1 0.7435 -7.4265 0.8329 16 6 2.4374 -8.5818 0.1164 17 6 1.8181 -9.6312 -0.8464 18 6 1.2216 -8.7105 -1.9407 19 8 0.7379 -7.5557 -1.2365 20 1 -0.4850 0.8400 -0.0004 21 1 2.9190 -3.6477 0.0002 22 1 0.5895 -4.9744 0.8897 23 1 0.5902 -4.9740 -0.8903 24 1 2.8381 -6.0216 -0.8888 25 1 2.8367 -6.0216 0.8912 26 1 3.4315 -8.2865 -0.2193 27 1 2.4687 -8.9627 1.1371 28 1 1.0376 -10.2076 -0.3497 29 1 2.5845 -10.2869 -1.2595 30 1 0.4007 -9.2132 -2.4519 31 1 1.9933 -8.4225 -2.6547 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044510723.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:21 Heat of formation + Delta-G solvation = -101.087709 kcal Electronic energy + Delta-G solvation = -13953.289080 eV Core-core repulsion = 11427.040906 eV Total energy + Delta-G solvation = -2526.248174 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.49831 -37.16347 -34.03713 -32.38087 -32.14881 -30.93006 -27.52123 -25.81585 -22.95202 -21.60887 -20.64869 -19.51332 -17.12986 -16.88195 -16.01394 -15.24930 -14.55050 -14.25698 -14.18343 -13.75111 -13.34645 -13.08148 -12.34220 -11.98384 -11.81778 -11.58517 -11.34625 -11.08402 -11.02454 -10.92289 -10.60851 -10.44723 -10.33471 -10.12132 -9.45076 -8.79506 -7.51713 -7.37439 -6.11391 -4.56747 3.17095 3.24723 3.29491 3.85092 4.15905 4.40467 4.61007 4.67052 4.76922 5.02390 5.15011 5.25611 5.43199 5.52076 5.58622 5.65219 5.77253 5.77942 5.88745 5.91684 6.06223 6.19845 6.71047 6.82413 7.12599 7.49874 8.02632 8.21203 8.41486 9.09343 9.64434 10.68335 10.87893 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.081574 B = 0.005310 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.164449 B = 5272.238581 C = 5420.669598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.553 3.447 10 O -0.581 6.581 11 N -0.770 5.770 12 C 0.136 3.864 13 C -0.138 4.138 14 C 0.083 3.917 15 H 0.082 0.918 16 C -0.151 4.151 17 C -0.157 4.157 18 C 0.049 3.951 19 O -0.372 6.372 20 H 0.267 0.733 21 H 0.378 0.622 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 -15.549 -0.617 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.357 3.643 10 O -0.464 6.464 11 N -0.425 5.425 12 C 0.011 3.989 13 C -0.176 4.176 14 C 0.025 3.975 15 H 0.100 0.900 16 C -0.188 4.188 17 C -0.195 4.195 18 C -0.028 4.028 19 O -0.291 6.291 20 H 0.078 0.922 21 H 0.209 0.791 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.407 -15.306 -0.686 16.247 hybrid contribution 1.140 0.607 0.066 1.294 sum 6.547 -14.699 -0.620 16.103 Atomic orbital electron populations 1.70046 1.07056 1.27030 1.35695 1.25717 0.94597 1.00260 0.92666 0.86329 0.80455 0.81848 0.78159 1.18827 1.20198 1.20200 1.20936 0.93563 0.89497 1.54388 0.91455 1.18229 0.87234 0.82534 0.76321 1.90595 1.14135 1.86941 1.54704 1.46142 1.08415 1.05183 1.82779 1.20801 0.93881 0.83286 1.00909 1.22175 0.98706 0.94320 1.02370 1.22732 0.93174 0.94113 0.87461 0.90035 1.23191 0.99720 0.95224 1.00706 1.23264 1.00815 0.98242 0.97169 1.23356 0.98718 0.86093 0.94647 1.88530 1.60774 1.46604 1.33220 0.92236 0.79100 0.93741 0.92747 0.91385 0.90896 0.90342 0.90095 0.90497 0.90191 0.89995 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.86 11.83 55.55 0.66 -23.21 16 2 C 0.09 2.51 5.50 -17.36 -0.10 2.41 16 3 Si 0.91 20.64 29.56 -169.99 -5.02 15.61 16 4 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.55 -16.03 9.54 -35.63 -0.34 -16.37 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 9 C 0.55 16.60 7.75 -12.99 -0.10 16.50 16 10 O -0.58 -19.85 15.02 5.20 0.08 -19.77 16 11 N -0.77 -18.31 5.55 -61.72 -0.34 -18.65 16 12 C 0.14 2.84 5.58 -4.04 -0.02 2.82 16 13 C -0.14 -2.06 4.90 -26.73 -0.13 -2.19 16 14 C 0.08 1.11 3.52 -26.01 -0.09 1.01 16 15 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.15 -1.45 6.54 -24.79 -0.16 -1.62 16 17 C -0.16 -1.36 7.16 -24.48 -0.18 -1.54 16 18 C 0.05 0.53 7.78 38.18 0.30 0.83 16 19 O -0.37 -5.67 10.63 -35.23 -0.37 -6.05 16 20 H 0.27 7.46 8.29 -40.82 -0.34 7.12 16 21 H 0.38 7.79 8.45 -40.82 -0.35 7.44 16 22 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.05 1.27 7.88 -51.93 -0.41 0.86 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.08 0.71 7.85 -51.93 -0.41 0.31 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 265.78 15.07 4.01 4.01 Total: -1.00 -36.17 265.78 -6.34 -42.50 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.51 Total: 3.70 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.82 Total: 1.85 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.31 Total: -41.85 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.30 Total: -25.82 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -36.17 -6.34 -42.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510723.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.585 kcal (2) G-P(sol) polarization free energy of solvation -36.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds