Wall clock time and date at job start Mon Mar 30 2020 02:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48500 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46870 * 299.99647 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.99714 * 3 2 1 7 7 C 1.40050 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00085 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99840 * 0.02562 * 7 2 1 10 10 O 1.21682 * 120.00159 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99597 * 179.97438 * 9 7 2 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 12 11 15 15 H 1.09005 * 109.82439 * 305.56435 * 14 13 12 16 16 C 1.54379 * 109.83367 * 184.58563 * 14 13 12 17 17 C 1.55302 * 102.25633 * 219.12953 * 16 14 13 18 18 C 1.54945 * 100.94043 * 34.12846 * 17 16 14 19 19 O 1.43238 * 109.83255 * 66.44927 * 14 13 12 20 20 H 0.96999 * 120.00129 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00676 * 359.97438 * 11 9 7 22 22 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 23 23 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 24 24 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 25 25 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 26 26 H 1.09004 * 110.84834 * 337.32138 * 16 14 13 27 27 H 1.08998 * 110.84865 * 100.93651 * 16 14 13 28 28 H 1.08999 * 111.12353 * 276.21044 * 17 16 14 29 29 H 1.08997 * 111.16322 * 152.07123 * 17 16 14 30 30 H 1.09002 * 110.31002 * 204.63882 * 18 17 16 31 31 H 1.09008 * 110.30527 * 82.47529 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7008 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9165 0.0000 13 6 2.2108 -6.0794 0.0007 14 6 1.4458 -7.4044 -0.0005 15 1 0.7435 -7.4265 0.8329 16 6 2.4374 -8.5818 0.1164 17 6 1.8181 -9.6312 -0.8464 18 6 1.2216 -8.7105 -1.9407 19 8 0.7379 -7.5557 -1.2365 20 1 -0.4850 0.8400 -0.0004 21 1 2.9190 -3.6477 0.0002 22 1 0.5895 -4.9744 0.8897 23 1 0.5902 -4.9740 -0.8903 24 1 2.8381 -6.0216 -0.8888 25 1 2.8367 -6.0216 0.8912 26 1 3.4315 -8.2865 -0.2193 27 1 2.4687 -8.9627 1.1371 28 1 1.0376 -10.2076 -0.3497 29 1 2.5845 -10.2869 -1.2595 30 1 0.4007 -9.2132 -2.4519 31 1 1.9933 -8.4225 -2.6547 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044510723.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:20 Heat of formation + Delta-G solvation = -129.156303 kcal Electronic energy + Delta-G solvation = -13954.506225 eV Core-core repulsion = 11427.040906 eV Total energy + Delta-G solvation = -2527.465320 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.50629 -39.32485 -35.86803 -34.56171 -33.13871 -32.43284 -29.15994 -27.60121 -24.34205 -22.51552 -21.84826 -21.58253 -19.18021 -17.91747 -17.46867 -16.97403 -16.04931 -15.95465 -15.87731 -15.17357 -14.45083 -14.39409 -14.22071 -13.68158 -13.12610 -12.87466 -12.80113 -12.65456 -12.60397 -12.31304 -11.98808 -11.89396 -11.73726 -11.64659 -10.95309 -10.49392 -9.87708 -9.49935 -8.29723 -6.87257 1.40351 1.41219 1.59602 2.25194 2.46297 2.93951 3.10876 3.60491 3.62285 3.88137 4.00222 4.17883 4.18811 4.31212 4.43745 4.63553 4.78458 4.83552 4.89885 4.95583 5.00897 5.15291 5.16708 5.31302 5.34672 5.86723 6.17571 6.23845 6.26519 6.85401 7.55688 8.48544 8.67092 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.081574 B = 0.005310 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.164449 B = 5272.238581 C = 5420.669598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.025 3.975 3 Si 1.004 2.996 4 H -0.245 1.245 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.531 3.469 10 O -0.637 6.637 11 N -0.756 5.756 12 C 0.139 3.861 13 C -0.122 4.122 14 C 0.076 3.924 15 H 0.075 0.925 16 C -0.142 4.142 17 C -0.147 4.147 18 C 0.036 3.964 19 O -0.411 6.411 20 H 0.275 0.725 21 H 0.396 0.604 22 H 0.026 0.974 23 H 0.021 0.979 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.313 -15.977 -0.389 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.167 1.167 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.610 4.610 8 H 0.109 0.891 9 C 0.336 3.664 10 O -0.524 6.524 11 N -0.411 5.411 12 C 0.014 3.986 13 C -0.159 4.159 14 C 0.018 3.982 15 H 0.093 0.907 16 C -0.179 4.179 17 C -0.185 4.185 18 C -0.040 4.040 19 O -0.332 6.332 20 H 0.085 0.915 21 H 0.230 0.770 22 H 0.045 0.955 23 H 0.039 0.961 24 H 0.093 0.907 25 H 0.116 0.884 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.111 -15.794 -0.460 17.761 hybrid contribution 0.270 0.676 -0.034 0.729 sum 8.381 -15.119 -0.494 17.293 Atomic orbital electron populations 1.70221 1.09749 1.28959 1.36549 1.27080 0.95555 1.05233 0.91094 0.84891 0.79321 0.74960 0.78558 1.16749 1.19344 1.19208 1.21495 0.94839 0.89968 1.54718 0.89125 1.18755 0.86908 0.84644 0.76136 1.90545 1.16463 1.88106 1.57327 1.45835 1.09324 1.04830 1.81072 1.20859 0.94996 0.84273 0.98438 1.22092 0.97450 0.92561 1.03828 1.22823 0.93876 0.94640 0.86840 0.90719 1.23170 0.98952 0.93586 1.02235 1.23254 1.01449 0.97812 0.95942 1.23620 0.99385 0.85625 0.95390 1.88502 1.61892 1.48587 1.34203 0.91536 0.76980 0.95528 0.96056 0.90682 0.88446 0.89266 0.88152 0.89919 0.87648 0.89219 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -52.45 11.83 21.84 0.26 -52.19 16 2 C 0.02 1.44 5.50 85.30 0.47 1.91 16 3 Si 1.00 41.85 29.56 68.60 2.03 43.88 16 4 H -0.24 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.57 -33.78 9.54 24.83 0.24 -33.54 16 8 H 0.09 4.73 7.85 -2.91 -0.02 4.71 16 9 C 0.53 32.83 7.75 86.36 0.67 33.50 16 10 O -0.64 -45.63 15.02 -4.29 -0.06 -45.69 16 11 N -0.76 -36.48 5.55 -467.40 -2.59 -39.08 16 12 C 0.14 5.99 5.58 86.38 0.48 6.47 16 13 C -0.12 -3.52 4.90 30.59 0.15 -3.37 16 14 C 0.08 1.95 3.52 31.06 0.11 2.06 16 15 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 16 C -0.14 -2.31 6.54 31.85 0.21 -2.10 16 17 C -0.15 -2.13 7.16 32.05 0.23 -1.90 16 18 C 0.04 0.74 7.78 72.65 0.56 1.31 16 19 O -0.41 -12.61 10.63 -148.98 -1.58 -14.19 16 20 H 0.27 15.69 8.29 -92.71 -0.77 14.92 16 21 H 0.40 16.03 8.45 -92.71 -0.78 15.25 16 22 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.02 1.05 7.88 -2.38 -0.02 1.03 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.09 1.29 7.85 -2.39 -0.02 1.27 16 27 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -82.17 265.78 1.50 -80.68 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.33 Total: 22.26 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 3.12 Total: 4.34 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -2.34 Total: -91.27 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -1.65 Total: -59.89 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -82.17 1.50 -80.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510723.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.479 kcal (2) G-P(sol) polarization free energy of solvation -82.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds