Wall clock time and date at job start Mon Mar 30 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 11 11 O 1.21283 * 120.00011 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00072 * 179.97438 * 10 9 7 13 13 C 1.46506 * 119.99880 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46745 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.82158 * 305.56344 * 14 13 12 16 16 C 1.54389 * 109.82768 * 184.58830 * 14 13 12 17 17 C 1.55306 * 102.24992 * 219.12915 * 16 14 13 18 18 C 1.54942 * 100.94404 * 34.13117 * 17 16 14 19 19 O 1.43236 * 109.83624 * 66.45345 * 14 13 12 20 20 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 22 22 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 23 23 H 0.96992 * 120.00141 * 0.02562 * 12 10 9 24 24 H 1.08995 * 109.46761 * 300.00152 * 13 12 10 25 25 H 1.08998 * 109.46975 * 59.99854 * 13 12 10 26 26 H 1.08995 * 110.84672 * 337.31878 * 16 14 13 27 27 H 1.09002 * 110.84829 * 100.93965 * 16 14 13 28 28 H 1.09001 * 111.11968 * 276.21178 * 17 16 14 29 29 H 1.08999 * 111.15739 * 152.06756 * 17 16 14 30 30 H 1.08998 * 110.31266 * 204.63798 * 18 17 16 31 31 H 1.08997 * 110.31158 * 82.46778 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 8 3.4228 -3.4229 0.0010 12 7 1.7812 -4.9152 0.0011 13 6 2.7334 -6.0287 0.0016 14 6 1.9684 -7.3537 0.0015 15 1 1.2668 -7.3755 0.8353 16 6 2.9603 -8.5311 0.1183 17 6 2.3402 -9.5809 -0.8437 18 6 1.7430 -8.6608 -1.9379 19 8 1.2597 -7.5057 -1.2340 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6248 -2.5571 -0.8896 23 1 0.8277 -5.0925 0.0011 24 1 3.3600 -5.9713 -0.8883 25 1 3.3599 -5.9705 0.8916 26 1 3.9540 -8.2359 -0.2182 27 1 2.9922 -8.9116 1.1392 28 1 1.5601 -10.1571 -0.3461 29 1 3.1065 -10.2367 -1.2570 30 1 0.9218 -9.1637 -2.4484 31 1 2.5141 -8.3730 -2.6525 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049805741.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:24 Heat of formation + Delta-G solvation = -101.997993 kcal Electronic energy + Delta-G solvation = -13988.682562 eV Core-core repulsion = 11462.394915 eV Total energy + Delta-G solvation = -2526.287647 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.79094 -38.40449 -34.17835 -33.19081 -32.36469 -30.32853 -28.34170 -25.39325 -23.10550 -21.96480 -21.21200 -19.65471 -17.18179 -16.86056 -16.30598 -15.72684 -15.31015 -14.67397 -14.20543 -13.66756 -13.58116 -13.29285 -12.70609 -12.35375 -12.05971 -11.98216 -11.45579 -11.42737 -11.14789 -11.05448 -10.63115 -10.54039 -10.00644 -9.66432 -8.85176 -8.51949 -8.46862 -8.31410 -6.32946 -4.01174 3.51122 3.53830 3.54428 3.70696 3.73281 3.99424 4.23610 4.55775 4.61524 4.65776 4.93395 5.01185 5.23726 5.41494 5.43942 5.47807 5.50030 5.55563 5.74154 5.81965 6.04436 6.31092 6.83940 6.88467 7.09412 7.12429 7.96080 8.36434 8.61987 8.94091 9.22023 9.68877 11.07132 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.078128 B = 0.005429 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.299774 B = 5156.723501 C = 5333.748906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.075 2.925 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.588 4.588 8 H 0.068 0.932 9 C -0.008 4.008 10 C 0.519 3.481 11 O -0.545 6.545 12 N -0.743 5.743 13 C 0.112 3.888 14 C 0.069 3.931 15 H 0.086 0.914 16 C -0.148 4.148 17 C -0.156 4.156 18 C 0.049 3.951 19 O -0.373 6.373 20 H 0.266 0.734 21 H 0.037 0.963 22 H 0.038 0.962 23 H 0.398 0.602 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 -19.159 -0.606 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.189 4.189 3 Si 0.903 3.097 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.626 4.626 8 H 0.087 0.913 9 C -0.048 4.048 10 C 0.309 3.691 11 O -0.421 6.421 12 N -0.398 5.398 13 C -0.013 4.013 14 C 0.011 3.989 15 H 0.104 0.896 16 C -0.186 4.186 17 C -0.193 4.193 18 C -0.028 4.028 19 O -0.293 6.293 20 H 0.076 0.924 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.232 0.768 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.920 -17.189 -0.678 17.448 hybrid contribution -0.104 -2.092 0.046 2.095 sum 2.816 -19.281 -0.632 19.496 Atomic orbital electron populations 1.70825 1.06842 1.30290 1.47300 1.25917 0.96463 1.02823 0.93742 0.83446 0.74714 0.74783 0.76720 1.20865 1.21365 1.21369 1.21978 0.95611 0.90197 1.54849 0.91338 1.19343 0.94846 0.92354 0.98227 1.21643 0.90865 0.83251 0.73369 1.90529 1.17928 1.84693 1.48955 1.46186 1.09637 1.05682 1.78263 1.21594 0.92422 0.85172 1.02087 1.23037 0.93760 0.94312 0.87785 0.89572 1.23115 0.99692 0.94664 1.01157 1.23265 1.00925 0.98195 0.96963 1.23387 0.98920 0.85810 0.94659 1.88494 1.60652 1.47048 1.33076 0.92427 0.94498 0.94433 0.76847 0.91836 0.91229 0.89949 0.89667 0.90343 0.89873 0.89744 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.27 13.65 55.43 0.76 -27.52 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 3 Si 1.08 26.50 29.90 -169.99 -5.08 21.41 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.59 -17.86 8.92 -34.44 -0.31 -18.17 16 8 H 0.07 2.18 6.75 -52.49 -0.35 1.82 16 9 C -0.01 -0.22 4.77 -29.03 -0.14 -0.36 16 10 C 0.52 12.59 7.82 -10.98 -0.09 12.50 16 11 O -0.55 -15.02 15.46 5.56 0.09 -14.94 16 12 N -0.74 -13.84 5.53 -60.29 -0.33 -14.17 16 13 C 0.11 1.73 5.21 -4.04 -0.02 1.71 16 14 C 0.07 0.81 3.56 -26.00 -0.09 0.72 16 15 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 16 C -0.15 -1.29 6.54 -24.78 -0.16 -1.45 16 17 C -0.16 -1.17 7.16 -24.48 -0.18 -1.34 16 18 C 0.05 0.47 7.78 38.18 0.30 0.77 16 19 O -0.37 -4.95 10.99 -35.23 -0.39 -5.33 16 20 H 0.27 8.03 7.22 -40.82 -0.29 7.74 16 21 H 0.04 0.97 8.01 -51.93 -0.42 0.55 16 22 H 0.04 1.00 8.01 -51.93 -0.42 0.58 16 23 H 0.40 6.56 8.47 -40.82 -0.35 6.21 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.08 0.71 7.85 -51.93 -0.41 0.31 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 265.52 15.07 4.00 4.00 Total: -1.00 -35.17 265.52 -6.16 -41.33 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.41 Total: 0.54 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -0.78 Total: -5.33 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.42 Total: -41.69 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.30 Total: -20.27 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -5.08 Total: 21.41 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -35.17 -6.16 -41.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049805741.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.669 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds