Wall clock time and date at job start Mon Mar 30 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 11 11 O 1.21283 * 120.00011 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00072 * 179.97438 * 10 9 7 13 13 C 1.46506 * 119.99880 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46745 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.82158 * 305.56344 * 14 13 12 16 16 C 1.54389 * 109.82768 * 184.58830 * 14 13 12 17 17 C 1.55306 * 102.24992 * 219.12915 * 16 14 13 18 18 C 1.54942 * 100.94404 * 34.13117 * 17 16 14 19 19 O 1.43236 * 109.83624 * 66.45345 * 14 13 12 20 20 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 22 22 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 23 23 H 0.96992 * 120.00141 * 0.02562 * 12 10 9 24 24 H 1.08995 * 109.46761 * 300.00152 * 13 12 10 25 25 H 1.08998 * 109.46975 * 59.99854 * 13 12 10 26 26 H 1.08995 * 110.84672 * 337.31878 * 16 14 13 27 27 H 1.09002 * 110.84829 * 100.93965 * 16 14 13 28 28 H 1.09001 * 111.11968 * 276.21178 * 17 16 14 29 29 H 1.08999 * 111.15739 * 152.06756 * 17 16 14 30 30 H 1.08998 * 110.31266 * 204.63798 * 18 17 16 31 31 H 1.08997 * 110.31158 * 82.46778 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 8 3.4228 -3.4229 0.0010 12 7 1.7812 -4.9152 0.0011 13 6 2.7334 -6.0287 0.0016 14 6 1.9684 -7.3537 0.0015 15 1 1.2668 -7.3755 0.8353 16 6 2.9603 -8.5311 0.1183 17 6 2.3402 -9.5809 -0.8437 18 6 1.7430 -8.6608 -1.9379 19 8 1.2597 -7.5057 -1.2340 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6248 -2.5571 -0.8896 23 1 0.8277 -5.0925 0.0011 24 1 3.3600 -5.9713 -0.8883 25 1 3.3599 -5.9705 0.8916 26 1 3.9540 -8.2359 -0.2182 27 1 2.9922 -8.9116 1.1392 28 1 1.5601 -10.1571 -0.3461 29 1 3.1065 -10.2367 -1.2570 30 1 0.9218 -9.1637 -2.4484 31 1 2.5141 -8.3730 -2.6525 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049805741.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:24 Heat of formation + Delta-G solvation = -128.362135 kcal Electronic energy + Delta-G solvation = -13989.825797 eV Core-core repulsion = 11462.394915 eV Total energy + Delta-G solvation = -2527.430882 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92095 -40.04462 -35.80108 -35.43861 -33.16201 -31.70510 -30.16591 -26.73690 -25.12123 -22.74780 -22.23873 -21.41891 -19.00081 -18.04451 -17.99388 -16.89899 -16.79773 -16.27987 -15.67192 -15.35091 -14.94945 -14.60593 -14.17897 -13.90792 -13.64881 -13.11541 -12.88100 -12.69921 -12.48693 -12.38491 -12.11862 -11.90358 -11.74135 -11.01006 -10.62689 -10.60791 -10.55057 -10.10003 -8.72418 -6.41877 1.52972 1.60960 1.74274 1.82846 2.26738 2.56869 2.87771 3.12333 3.50155 3.68421 3.92637 4.13720 4.14142 4.26505 4.40190 4.55323 4.64173 4.72383 4.80369 4.89797 4.93966 4.96516 5.02377 5.24185 5.45854 5.79598 6.02835 6.19529 6.45459 6.70524 7.29073 7.41382 8.69734 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.078128 B = 0.005429 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.299774 B = 5156.723501 C = 5333.748906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.030 4.030 3 Si 1.120 2.880 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.614 4.614 8 H 0.048 0.952 9 C -0.009 4.009 10 C 0.520 3.480 11 O -0.584 6.584 12 N -0.722 5.722 13 C 0.108 3.892 14 C 0.073 3.927 15 H 0.098 0.902 16 C -0.145 4.145 17 C -0.144 4.144 18 C 0.037 3.963 19 O -0.402 6.402 20 H 0.259 0.741 21 H 0.039 0.961 22 H 0.035 0.965 23 H 0.410 0.590 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 -20.478 -0.340 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.228 4.228 3 Si 0.941 3.059 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.652 4.652 8 H 0.066 0.934 9 C -0.049 4.049 10 C 0.309 3.691 11 O -0.464 6.464 12 N -0.375 5.375 13 C -0.015 4.015 14 C 0.015 3.985 15 H 0.116 0.884 16 C -0.183 4.183 17 C -0.182 4.182 18 C -0.039 4.039 19 O -0.322 6.322 20 H 0.069 0.931 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.246 0.754 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.065 -18.583 -0.415 18.838 hybrid contribution -0.201 -1.773 -0.069 1.786 sum 2.864 -20.356 -0.484 20.562 Atomic orbital electron populations 1.70933 1.07442 1.30021 1.48342 1.27367 0.96622 1.06319 0.92452 0.82896 0.74104 0.71132 0.77807 1.19894 1.19817 1.20006 1.22231 0.94988 0.92359 1.55670 0.93410 1.19237 0.95074 0.92545 0.98041 1.21182 0.89685 0.84603 0.73648 1.90503 1.19081 1.85557 1.51286 1.45948 1.10979 1.04779 1.75771 1.21861 0.92255 0.85835 1.01582 1.23058 0.94418 0.93126 0.87887 0.88393 1.23144 0.98709 0.93577 1.02848 1.23254 1.01561 0.97663 0.95709 1.23631 0.99569 0.85461 0.95260 1.88465 1.61189 1.48784 1.33777 0.93148 0.94271 0.94690 0.75423 0.93250 0.90829 0.90088 0.87549 0.89134 0.87871 0.88421 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 13.65 21.45 0.29 -57.23 16 2 C -0.03 -1.78 5.46 84.65 0.46 -1.32 16 3 Si 1.12 52.90 29.90 68.60 2.05 54.95 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.61 -37.93 8.92 25.60 0.23 -37.70 16 8 H 0.05 3.11 6.75 -2.91 -0.02 3.09 16 9 C -0.01 -0.51 4.77 29.10 0.14 -0.37 16 10 C 0.52 25.52 7.82 87.66 0.69 26.20 16 11 O -0.58 -32.84 15.46 -3.04 -0.05 -32.88 16 12 N -0.72 -26.62 5.53 -463.06 -2.56 -29.18 16 13 C 0.11 3.27 5.21 86.38 0.45 3.72 16 14 C 0.07 1.59 3.56 31.06 0.11 1.70 16 15 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 16 C -0.14 -2.12 6.54 31.86 0.21 -1.91 16 17 C -0.14 -1.71 7.16 32.05 0.23 -1.48 16 18 C 0.04 0.64 7.78 72.65 0.56 1.20 16 19 O -0.40 -10.07 10.99 -148.98 -1.64 -11.71 16 20 H 0.26 15.83 7.22 -92.70 -0.67 15.16 16 21 H 0.04 2.08 8.01 -2.39 -0.02 2.06 16 22 H 0.04 1.89 8.01 -2.39 -0.02 1.87 16 23 H 0.41 13.20 8.47 -92.71 -0.79 12.41 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.08 1.22 7.85 -2.39 -0.02 1.20 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -75.79 265.52 1.61 -74.18 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.43 Total: 11.82 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 3.08 Total: -9.95 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -2.27 Total: -86.40 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -1.68 Total: -44.59 kcal Atomic # 14 Polarization: 52.90 SS G_CDS: 2.05 Total: 54.95 kcal Total: -75.79 1.61 -74.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049805741.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.183 kcal (2) G-P(sol) polarization free energy of solvation -75.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds