Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00208 * 2 1 4 4 H 1.48499 * 109.47170 * 239.99991 * 3 2 1 5 5 H 1.48501 * 109.46940 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47137 * 120.00188 * 3 2 1 7 7 C 1.37879 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00438 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00189 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47644 * 180.02562 * 9 7 2 11 11 C 1.48680 * 111.10747 * 280.31691 * 10 9 7 12 12 C 1.54376 * 104.67263 * 201.09697 * 11 10 9 13 13 C 1.54263 * 105.06182 * 23.76805 * 12 11 10 14 14 C 1.48554 * 111.00578 * 164.89686 * 10 9 7 15 15 H 1.09005 * 110.40610 * 40.14289 * 14 10 9 16 16 C 1.52998 * 110.41526 * 277.81973 * 14 10 9 17 17 C 1.50689 * 109.47527 * 178.57793 * 16 14 10 18 18 O 1.20836 * 119.99931 * 357.02748 * 17 16 14 19 19 O 1.34232 * 120.00309 * 177.02387 * 17 16 14 20 20 H 0.97005 * 119.99702 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46808 * 59.99892 * 9 7 2 22 22 H 1.09002 * 109.46921 * 300.00428 * 9 7 2 23 23 H 1.09004 * 110.44286 * 82.25511 * 11 10 9 24 24 H 1.08999 * 110.40099 * 319.91461 * 11 10 9 25 25 H 1.09009 * 110.32156 * 264.87610 * 12 11 10 26 26 H 1.08995 * 110.41283 * 142.71121 * 12 11 10 27 27 H 1.08996 * 110.32548 * 241.10627 * 13 12 11 28 28 H 1.08996 * 110.40492 * 118.93911 * 13 12 11 29 29 H 1.08998 * 109.46982 * 58.57721 * 16 14 10 30 30 H 1.09002 * 109.46991 * 298.58253 * 16 14 10 31 31 H 0.96695 * 117.00160 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 2.7422 -3.8614 -1.3652 12 6 3.2576 -5.3160 -1.3267 13 6 2.4626 -5.9931 -0.1912 14 6 1.5337 -4.8905 0.3608 15 1 0.5522 -4.9496 -0.1097 16 6 1.4040 -5.0134 1.8803 17 6 0.6897 -6.2956 2.2215 18 8 0.2744 -7.0091 1.3392 19 8 0.5147 -6.6453 3.5057 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8897 23 1 3.5598 -3.1739 -1.5821 24 1 1.9519 -3.7576 -2.1086 25 1 4.3246 -5.3338 -1.1045 26 1 3.0608 -5.8143 -2.2759 27 1 3.1393 -6.3432 0.5882 28 1 1.8742 -6.8233 -0.5819 29 1 0.8357 -4.1671 2.2661 30 1 2.3968 -5.0197 2.3303 31 1 0.0510 -7.4767 3.6750 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061895240.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = -120.394663 kcal Electronic energy + Delta-G solvation = -14444.586226 eV Core-core repulsion = 11917.500840 eV Total energy + Delta-G solvation = -2527.085387 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.39625 -39.65939 -37.06485 -35.17999 -32.84536 -32.65301 -28.33639 -27.61845 -24.44066 -22.93822 -21.70187 -20.77008 -19.04028 -18.44106 -17.64041 -16.96671 -16.78087 -16.14601 -15.92883 -15.01273 -14.56948 -14.43400 -14.00233 -13.66522 -13.37093 -12.94050 -12.85444 -12.52629 -12.47739 -12.26099 -12.05572 -11.84221 -11.77055 -11.58073 -11.32439 -11.28408 -10.58958 -9.26042 -8.19814 -6.30220 1.21751 1.42414 1.45578 1.53583 2.08507 2.41922 3.12426 3.42787 3.70153 3.75585 4.09371 4.25076 4.29071 4.47864 4.59828 4.69872 4.82187 4.96810 4.99452 5.07301 5.08621 5.17932 5.25694 5.40786 5.62502 5.65996 6.01704 6.21844 6.48037 6.85071 7.03677 7.39617 8.90993 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034767 B = 0.008120 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.169944 B = 3447.313215 C = 3975.576744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.064 0.936 9 C 0.197 3.803 10 N -0.507 5.507 11 C 0.040 3.960 12 C -0.114 4.114 13 C -0.106 4.106 14 C 0.066 3.934 15 H 0.026 0.974 16 C -0.097 4.097 17 C 0.494 3.506 18 O -0.543 6.543 19 O -0.510 6.510 20 H 0.264 0.736 21 H -0.038 1.038 22 H 0.007 0.993 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.717 -11.812 3.361 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.231 5.231 11 C -0.089 4.089 12 C -0.152 4.152 13 C -0.144 4.144 14 C -0.043 4.043 15 H 0.045 0.955 16 C -0.135 4.135 17 C 0.338 3.662 18 O -0.434 6.434 19 O -0.324 6.324 20 H 0.073 0.927 21 H -0.021 1.021 22 H 0.026 0.974 23 H 0.092 0.908 24 H 0.038 0.962 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.146 0.854 31 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 5.073 -11.375 3.438 12.920 hybrid contribution -1.240 0.411 -0.553 1.419 sum 3.833 -10.963 2.884 11.967 Atomic orbital electron populations 1.70083 1.07777 1.27972 1.51794 1.25936 0.95741 1.03266 0.94805 0.85415 0.78116 0.77791 0.79167 1.19343 1.20947 1.19103 1.21407 0.93704 0.90882 1.50005 0.91822 1.19570 0.90217 0.89547 0.93657 1.65292 1.31971 1.02202 1.23672 1.23017 0.98685 0.97769 0.89385 1.22312 1.00829 0.93090 0.98977 1.22284 0.97285 0.96263 0.98579 1.22375 0.96559 0.91639 0.93723 0.95543 1.21180 1.03103 0.92471 0.96765 1.23308 0.75751 0.87046 0.80118 1.90686 1.48802 1.54209 1.49698 1.84513 1.73182 1.46791 1.27880 0.92703 1.02050 0.97446 0.90800 0.96216 0.89542 0.90126 0.90057 0.91008 0.88621 0.85350 0.71064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.64 13.29 21.45 0.28 -56.35 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.52 -29.70 9.13 25.60 0.23 -29.47 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.20 10.58 4.58 85.56 0.39 10.97 16 10 N -0.51 -21.94 4.98 -860.93 -4.28 -26.23 16 11 C 0.04 1.52 6.27 86.43 0.54 2.06 16 12 C -0.11 -3.26 7.00 31.49 0.22 -3.04 16 13 C -0.11 -3.14 5.59 31.49 0.18 -2.96 16 14 C 0.07 2.42 1.87 45.06 0.08 2.51 16 15 H 0.03 1.11 7.83 -2.38 -0.02 1.09 16 16 C -0.10 -3.06 5.44 29.84 0.16 -2.90 16 17 C 0.49 13.92 8.08 71.23 0.58 14.49 16 18 O -0.54 -17.92 15.63 21.93 0.34 -17.58 16 19 O -0.51 -10.73 13.42 -51.44 -0.69 -11.42 16 20 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 21 H -0.04 -2.27 7.66 -2.39 -0.02 -2.29 16 22 H 0.01 0.43 7.06 -2.39 -0.02 0.41 16 23 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 24 H 0.02 0.81 7.69 -2.39 -0.02 0.79 16 25 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.08 2.10 7.80 -2.39 -0.02 2.08 16 28 H 0.07 2.10 7.66 -2.39 -0.02 2.09 16 29 H 0.10 3.32 7.23 -2.39 -0.02 3.30 16 30 H 0.13 3.54 8.06 -2.39 -0.02 3.52 16 31 H 0.43 4.78 9.10 -74.06 -0.67 4.10 16 Total: -1.00 -68.26 262.24 0.98 -67.28 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.45 Total: 5.86 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 2.85 Total: -7.86 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -4.00 Total: -82.58 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.35 Total: -29.00 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.26 0.98 -67.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061895240.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.111 kcal (2) G-P(sol) polarization free energy of solvation -68.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds