Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47194 * 2 1 4 4 C 1.50696 * 110.64265 * 298.31163 * 3 2 1 5 5 O 1.20831 * 120.00211 * 241.68611 * 4 3 2 6 6 O 1.34232 * 119.99928 * 61.68465 * 4 3 2 7 7 C 1.55160 * 110.87306 * 175.06332 * 3 2 1 8 8 C 1.55138 * 101.48391 * 205.90020 * 7 3 2 9 9 N 1.47425 * 104.72390 * 37.29547 * 8 7 3 10 10 C 1.36937 * 125.64617 * 155.82126 * 9 8 7 11 11 H 1.07999 * 119.99762 * 190.37259 * 10 9 8 12 12 C 1.38804 * 120.00239 * 10.36941 * 10 9 8 13 13 N 1.31625 * 120.00204 * 9.36594 * 12 10 9 14 14 Si 1.86798 * 120.00108 * 189.09093 * 12 10 9 15 15 H 1.48504 * 109.47245 * 84.99172 * 14 12 10 16 16 H 1.48502 * 109.47100 * 204.99245 * 14 12 10 17 17 H 1.48496 * 109.47120 * 324.99132 * 14 12 10 18 18 C 1.47023 * 108.70119 * 335.55071 * 9 8 7 19 19 H 1.09000 * 109.47166 * 300.00133 * 1 2 3 20 20 H 1.09003 * 109.47086 * 60.00291 * 1 2 3 21 21 H 1.09006 * 109.47283 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47166 * 239.99867 * 2 1 3 23 23 H 1.09003 * 109.47086 * 119.99708 * 2 1 3 24 24 H 0.96704 * 116.99924 * 179.97438 * 6 4 3 25 25 H 1.08995 * 111.00429 * 324.13514 * 7 3 2 26 26 H 1.08991 * 111.00535 * 87.98916 * 7 3 2 27 27 H 1.09002 * 110.49151 * 278.44933 * 8 7 3 28 28 H 1.09000 * 110.33970 * 156.05820 * 8 7 3 29 29 H 0.96990 * 120.00360 * 179.72380 * 13 12 10 30 30 H 1.09002 * 109.88173 * 120.70653 * 18 9 8 31 31 H 1.08993 * 109.88424 * 241.71679 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5865 2.1663 -1.2415 5 8 2.4024 2.5964 -2.0222 6 8 0.2761 2.3332 -1.4802 7 6 3.5860 1.4822 0.1248 8 6 3.8082 2.8757 0.7693 9 7 2.6872 3.0349 1.7135 10 6 2.6835 3.8430 2.8190 11 1 1.8833 3.7676 3.5402 12 6 3.7084 4.7589 3.0126 13 7 4.5808 4.9831 2.0528 14 14 3.8450 5.6792 4.6324 15 1 4.5931 4.8500 5.6112 16 1 4.5655 6.9594 4.4152 17 1 2.4850 5.9597 5.1585 18 6 1.5716 2.1872 1.2679 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.0338 2.8042 -2.2893 25 1 3.9461 0.6853 0.7754 26 1 4.0586 1.4273 -0.8558 27 1 3.7781 3.6567 0.0095 28 1 4.7590 2.8997 1.3017 29 1 5.2945 5.6261 2.1865 30 1 1.3178 1.4687 2.0473 31 1 0.7045 2.8063 1.0380 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062937301.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = -74.907456 kcal Electronic energy + Delta-G solvation = -15058.117916 eV Core-core repulsion = 12533.005003 eV Total energy + Delta-G solvation = -2525.112913 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.32921 -37.35657 -35.73518 -33.89430 -31.51558 -29.24100 -27.32583 -25.01169 -23.29002 -22.34161 -20.15187 -19.17449 -17.52195 -16.87902 -16.01484 -15.40115 -14.70229 -13.95363 -13.79547 -13.40714 -12.87738 -12.77292 -12.47241 -12.03512 -11.68551 -11.37774 -11.16422 -11.00533 -10.83300 -10.66521 -10.43659 -10.18725 -9.94432 -9.83116 -9.78796 -9.65968 -8.56620 -6.80041 -5.72580 -3.07041 2.67406 3.40163 3.42602 3.45790 3.48041 4.49365 4.95052 5.04595 5.27102 5.47807 5.57109 5.65918 5.73191 5.79306 5.98844 6.09833 6.27864 6.30249 6.50093 6.56638 6.57685 6.64817 6.75594 6.88003 7.50859 7.64906 7.81071 8.26421 8.32430 9.19712 9.81239 10.48473 11.40163 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044239 B = 0.009427 C = 0.008924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.768485 B = 2969.326489 C = 3136.927666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.102 4.102 3 C -0.065 4.065 4 C 0.500 3.500 5 O -0.513 6.513 6 O -0.512 6.512 7 C -0.130 4.130 8 C 0.171 3.829 9 N -0.605 5.605 10 C -0.232 4.232 11 H 0.077 0.923 12 C -0.006 4.006 13 N -0.916 5.916 14 Si 0.912 3.088 15 H -0.288 1.288 16 H -0.291 1.291 17 H -0.281 1.281 18 C 0.152 3.848 19 H 0.060 0.940 20 H 0.071 0.929 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.398 0.602 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.254 0.746 30 H 0.038 0.962 31 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 -8.856 -4.958 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.140 4.140 3 C -0.067 4.067 4 C 0.342 3.658 5 O -0.400 6.400 6 O -0.323 6.323 7 C -0.169 4.169 8 C 0.046 3.954 9 N -0.332 5.332 10 C -0.361 4.361 11 H 0.095 0.905 12 C -0.203 4.203 13 N -0.562 5.562 14 Si 0.743 3.257 15 H -0.215 1.215 16 H -0.217 1.217 17 H -0.207 1.207 18 C 0.026 3.974 19 H 0.079 0.921 20 H 0.090 0.910 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.256 0.744 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.271 -8.761 -4.720 11.763 hybrid contribution -0.054 0.955 0.221 0.981 sum -6.325 -7.806 -4.500 11.009 Atomic orbital electron populations 1.21995 0.95071 1.01084 1.03656 1.21473 0.96691 0.93268 1.02601 1.21599 0.98777 0.95044 0.91274 1.23267 0.79453 0.76278 0.86766 1.90669 1.54382 1.47017 1.47905 1.84636 1.27730 1.72316 1.47662 1.23148 0.90505 1.01743 1.01485 1.21503 0.92826 0.89590 0.91461 1.44560 1.10106 1.50081 1.28439 1.18995 1.08052 1.12258 0.96766 0.90516 1.24860 0.98830 0.98494 0.98142 1.69969 1.18073 1.37228 1.30975 0.86136 0.77622 0.78959 0.83005 1.21468 1.21710 1.20676 1.21298 0.92036 0.93170 0.90878 0.92087 0.90996 0.93210 0.91967 0.90359 0.74402 0.90785 0.90763 0.94969 0.91025 0.93604 0.94427 0.95226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.26 37.15 0.34 -1.67 16 2 C -0.10 -1.43 4.89 -26.74 -0.13 -1.56 16 3 C -0.07 -1.18 0.61 -153.83 -0.09 -1.28 16 4 C 0.50 9.16 6.66 36.00 0.24 9.40 16 5 O -0.51 -10.84 16.17 -18.75 -0.30 -11.14 16 6 O -0.51 -7.39 10.40 -39.26 -0.41 -7.80 16 7 C -0.13 -2.58 5.77 -24.46 -0.14 -2.72 16 8 C 0.17 4.34 5.17 -2.41 -0.01 4.33 16 9 N -0.61 -15.87 3.39 -169.93 -0.58 -16.45 16 10 C -0.23 -6.59 10.24 -15.06 -0.15 -6.75 16 11 H 0.08 2.09 7.84 -52.49 -0.41 1.67 16 12 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 13 N -0.92 -27.58 10.69 55.49 0.59 -26.99 16 14 Si 0.91 22.30 29.56 -169.99 -5.03 17.28 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C 0.15 3.22 5.41 -3.06 -0.02 3.20 16 19 H 0.06 0.80 7.15 -51.93 -0.37 0.43 16 20 H 0.07 0.91 5.57 -51.93 -0.29 0.62 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.40 3.96 9.10 45.56 0.41 4.37 16 25 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 26 H 0.07 1.43 7.31 -51.93 -0.38 1.05 16 27 H 0.03 0.92 7.88 -51.93 -0.41 0.51 16 28 H 0.07 1.98 6.95 -51.93 -0.36 1.62 16 29 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.04 0.75 7.56 -51.93 -0.39 0.36 16 31 H 0.03 0.65 7.64 -51.93 -0.40 0.25 16 LS Contribution 252.73 15.07 3.81 3.81 Total: -1.00 -32.88 252.73 -5.39 -38.27 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -3.42 Total: 0.33 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.06 Total: 2.68 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.02 Total: -43.43 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.71 Total: -18.94 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.88 -5.39 -38.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062937301.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.638 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds