Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47194 * 2 1 4 4 C 1.50696 * 110.64265 * 298.31163 * 3 2 1 5 5 O 1.20831 * 120.00211 * 241.68611 * 4 3 2 6 6 O 1.34232 * 119.99928 * 61.68465 * 4 3 2 7 7 C 1.55160 * 110.87306 * 175.06332 * 3 2 1 8 8 C 1.55138 * 101.48391 * 205.90020 * 7 3 2 9 9 N 1.47425 * 104.72390 * 37.29547 * 8 7 3 10 10 C 1.36937 * 125.64617 * 155.82126 * 9 8 7 11 11 H 1.07999 * 119.99762 * 190.37259 * 10 9 8 12 12 C 1.38804 * 120.00239 * 10.36941 * 10 9 8 13 13 N 1.31625 * 120.00204 * 9.36594 * 12 10 9 14 14 Si 1.86798 * 120.00108 * 189.09093 * 12 10 9 15 15 H 1.48504 * 109.47245 * 84.99172 * 14 12 10 16 16 H 1.48502 * 109.47100 * 204.99245 * 14 12 10 17 17 H 1.48496 * 109.47120 * 324.99132 * 14 12 10 18 18 C 1.47023 * 108.70119 * 335.55071 * 9 8 7 19 19 H 1.09000 * 109.47166 * 300.00133 * 1 2 3 20 20 H 1.09003 * 109.47086 * 60.00291 * 1 2 3 21 21 H 1.09006 * 109.47283 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47166 * 239.99867 * 2 1 3 23 23 H 1.09003 * 109.47086 * 119.99708 * 2 1 3 24 24 H 0.96704 * 116.99924 * 179.97438 * 6 4 3 25 25 H 1.08995 * 111.00429 * 324.13514 * 7 3 2 26 26 H 1.08991 * 111.00535 * 87.98916 * 7 3 2 27 27 H 1.09002 * 110.49151 * 278.44933 * 8 7 3 28 28 H 1.09000 * 110.33970 * 156.05820 * 8 7 3 29 29 H 0.96990 * 120.00360 * 179.72380 * 13 12 10 30 30 H 1.09002 * 109.88173 * 120.70653 * 18 9 8 31 31 H 1.08993 * 109.88424 * 241.71679 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5865 2.1663 -1.2415 5 8 2.4024 2.5964 -2.0222 6 8 0.2761 2.3332 -1.4802 7 6 3.5860 1.4822 0.1248 8 6 3.8082 2.8757 0.7693 9 7 2.6872 3.0349 1.7135 10 6 2.6835 3.8430 2.8190 11 1 1.8833 3.7676 3.5402 12 6 3.7084 4.7589 3.0126 13 7 4.5808 4.9831 2.0528 14 14 3.8450 5.6792 4.6324 15 1 4.5931 4.8500 5.6112 16 1 4.5655 6.9594 4.4152 17 1 2.4850 5.9597 5.1585 18 6 1.5716 2.1872 1.2679 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.0338 2.8042 -2.2893 25 1 3.9461 0.6853 0.7754 26 1 4.0586 1.4273 -0.8558 27 1 3.7781 3.6567 0.0095 28 1 4.7590 2.8997 1.3017 29 1 5.2945 5.6261 2.1865 30 1 1.3178 1.4687 2.0473 31 1 0.7045 2.8063 1.0380 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062937301.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = -97.902659 kcal Electronic energy + Delta-G solvation = -15059.115063 eV Core-core repulsion = 12533.005003 eV Total energy + Delta-G solvation = -2526.110060 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.78571 -38.97595 -37.11603 -35.58891 -33.31221 -31.04856 -28.91345 -26.92874 -24.74193 -23.78121 -22.04151 -20.57342 -18.97536 -18.83968 -17.52929 -16.87928 -16.70668 -15.70104 -15.32369 -14.75673 -14.31040 -14.26648 -14.12715 -13.63015 -13.36800 -12.96722 -12.77712 -12.66147 -12.54346 -12.18141 -11.99955 -11.83363 -11.78597 -11.51030 -11.38442 -11.24903 -10.69688 -8.91067 -7.89462 -5.26863 1.23389 1.45714 1.48748 1.56844 2.12359 2.48338 3.29907 3.46654 3.59791 3.88251 3.94357 4.34916 4.45990 4.56041 4.62282 4.73354 4.89018 4.97137 5.00230 5.13106 5.20851 5.34579 5.41943 5.54001 5.59585 5.62477 5.70207 6.16516 7.02002 7.05347 7.71717 8.38287 9.22570 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044239 B = 0.009427 C = 0.008924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.768485 B = 2969.326489 C = 3136.927666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.096 4.096 3 C -0.060 4.060 4 C 0.500 3.500 5 O -0.549 6.549 6 O -0.498 6.498 7 C -0.117 4.117 8 C 0.179 3.821 9 N -0.627 5.627 10 C -0.246 4.246 11 H 0.086 0.914 12 C -0.067 4.067 13 N -0.952 5.952 14 Si 0.983 3.017 15 H -0.281 1.281 16 H -0.297 1.297 17 H -0.267 1.267 18 C 0.150 3.850 19 H 0.051 0.949 20 H 0.069 0.931 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.420 0.580 25 H 0.096 0.904 26 H 0.079 0.921 27 H -0.013 1.013 28 H 0.038 0.962 29 H 0.248 0.752 30 H 0.058 0.942 31 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 -10.482 -4.490 14.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.134 4.134 3 C -0.061 4.061 4 C 0.344 3.656 5 O -0.439 6.439 6 O -0.311 6.311 7 C -0.155 4.155 8 C 0.054 3.946 9 N -0.353 5.353 10 C -0.375 4.375 11 H 0.104 0.896 12 C -0.260 4.260 13 N -0.600 5.600 14 Si 0.810 3.190 15 H -0.208 1.208 16 H -0.224 1.224 17 H -0.191 1.191 18 C 0.026 3.974 19 H 0.070 0.930 20 H 0.088 0.912 21 H 0.094 0.906 22 H 0.099 0.901 23 H 0.109 0.891 24 H 0.281 0.719 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.005 0.995 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.869 -10.414 -4.259 13.730 hybrid contribution 0.338 1.470 0.031 1.508 sum -7.532 -8.944 -4.229 12.434 Atomic orbital electron populations 1.21971 0.93766 1.02677 1.03099 1.21516 0.97740 0.89971 1.04161 1.21598 0.97208 0.97539 0.89785 1.23337 0.80188 0.75595 0.86465 1.90668 1.55553 1.48436 1.49230 1.84576 1.25431 1.72137 1.48977 1.22987 0.92454 0.98556 1.01519 1.21195 0.91557 0.91782 0.90116 1.44871 1.11963 1.50379 1.28129 1.19446 1.08079 1.12297 0.97678 0.89643 1.25773 0.98743 0.99884 1.01596 1.70199 1.18711 1.37998 1.33061 0.85039 0.78024 0.77119 0.78785 1.20758 1.22373 1.19135 1.21451 0.90286 0.92883 0.92816 0.92951 0.91224 0.90585 0.90146 0.89091 0.71889 0.88518 0.90274 0.99507 0.94377 0.94288 0.92430 0.95812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 9.26 71.98 0.67 -2.67 16 2 C -0.10 -2.33 4.89 30.59 0.15 -2.18 16 3 C -0.06 -2.05 0.61 -51.74 -0.03 -2.08 16 4 C 0.50 17.65 6.66 71.23 0.47 18.12 16 5 O -0.55 -23.07 16.17 21.95 0.35 -22.72 16 6 O -0.50 -13.25 10.40 -51.44 -0.54 -13.78 16 7 C -0.12 -4.54 5.77 32.07 0.18 -4.36 16 8 C 0.18 9.37 5.17 86.94 0.45 9.82 16 9 N -0.63 -33.12 3.39 -691.53 -2.35 -35.46 16 10 C -0.25 -14.04 10.24 84.03 0.86 -13.18 16 11 H 0.09 4.59 7.84 -2.91 -0.02 4.57 16 12 C -0.07 -3.88 5.40 84.86 0.46 -3.42 16 13 N -0.95 -59.36 10.69 21.65 0.23 -59.13 16 14 Si 0.98 46.30 29.56 68.60 2.03 48.32 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 16 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 18 C 0.15 6.17 5.41 86.73 0.47 6.63 16 19 H 0.05 1.20 7.15 -2.39 -0.02 1.18 16 20 H 0.07 1.50 5.57 -2.39 -0.01 1.49 16 21 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 22 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.42 7.37 9.10 -74.05 -0.67 6.69 16 25 H 0.10 3.30 8.05 -2.39 -0.02 3.28 16 26 H 0.08 3.00 7.31 -2.39 -0.02 2.98 16 27 H -0.01 -0.79 7.88 -2.39 -0.02 -0.81 16 28 H 0.04 2.20 6.95 -2.39 -0.02 2.19 16 29 H 0.25 15.01 8.31 -92.72 -0.77 14.24 16 30 H 0.06 2.16 7.56 -2.39 -0.02 2.14 16 31 H 0.02 1.01 7.64 -2.39 -0.02 0.99 16 Total: -1.00 -72.82 252.73 3.87 -68.95 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 0.46 Total: 7.14 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 3.68 Total: 6.68 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -2.12 Total: -94.60 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.18 Total: -36.50 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -72.82 3.87 -68.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062937301.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.951 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds