Wall clock time and date at job start Mon Mar 30 2020 02:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47474 * 325.00605 * 10 9 7 12 12 C 1.53007 * 109.46908 * 85.00241 * 10 9 7 13 13 C 1.52998 * 109.47127 * 60.00037 * 12 10 9 14 14 C 1.52995 * 109.47273 * 59.99663 * 13 12 10 15 15 C 1.52999 * 109.47466 * 300.00048 * 14 13 12 16 16 H 1.08995 * 109.47341 * 300.00096 * 15 14 13 17 17 C 1.50695 * 109.47093 * 179.97438 * 15 14 13 18 18 O 1.20828 * 120.00081 * 239.99697 * 17 15 14 19 19 O 1.34231 * 120.00289 * 60.00690 * 17 15 14 20 20 C 1.52998 * 109.47304 * 204.99863 * 10 9 7 21 21 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 22 22 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 23 23 H 1.09004 * 109.46844 * 180.02562 * 12 10 9 24 24 H 1.08998 * 109.46879 * 299.99671 * 12 10 9 25 25 H 1.09005 * 109.46906 * 300.00062 * 13 12 10 26 26 H 1.08997 * 109.46618 * 180.02562 * 13 12 10 27 27 H 1.09001 * 109.47452 * 179.97438 * 14 13 12 28 28 H 1.09005 * 109.46829 * 60.00351 * 14 13 12 29 29 H 0.96698 * 116.99972 * 180.02562 * 19 17 15 30 30 H 1.09005 * 109.46926 * 60.00133 * 20 10 9 31 31 H 1.08994 * 109.47279 * 179.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5505 -0.5888 12 6 2.4220 -4.0355 1.4376 13 6 1.1437 -4.1847 2.2649 14 6 0.2666 -5.2800 1.6553 15 6 -0.0973 -4.9013 0.2183 16 1 -0.6423 -3.9574 0.2182 17 6 -0.9607 -5.9805 -0.3824 18 8 -0.5916 -6.5694 -1.3707 19 8 -2.1401 -6.2874 0.1805 20 6 1.1811 -4.7521 -0.6090 21 1 -0.4850 -0.8401 -0.0004 22 1 0.3556 -2.3881 -0.0002 23 1 2.9675 -4.9793 1.4376 24 1 3.0469 -3.2551 1.8719 25 1 0.5986 -3.2407 2.2649 26 1 1.4030 -4.4541 3.2888 27 1 -0.6440 -5.3867 2.2449 28 1 0.8116 -6.2240 1.6553 29 1 -2.6585 -6.9868 -0.2404 30 1 0.9218 -4.4823 -1.6328 31 1 1.7263 -5.6959 -0.6095 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070502329.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:23 Heat of formation + Delta-G solvation = -100.964159 kcal Electronic energy + Delta-G solvation = -14767.784336 eV Core-core repulsion = 12241.541519 eV Total energy + Delta-G solvation = -2526.242817 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40888 -38.08831 -36.00775 -33.95770 -31.21621 -30.66982 -27.96331 -24.27074 -23.41587 -21.98160 -20.78850 -18.74487 -17.93798 -17.33673 -16.45226 -15.66881 -14.68011 -14.59406 -13.87982 -13.76663 -13.50241 -13.19333 -12.33772 -12.15661 -11.74377 -11.58152 -11.41557 -11.07275 -10.75372 -10.70073 -10.51097 -10.08746 -9.92953 -9.88664 -9.74394 -9.14343 -8.86763 -7.02314 -6.08816 -3.08457 2.33065 3.17399 3.52631 3.55929 3.73306 4.68234 4.87888 4.99449 5.14482 5.52242 5.58599 5.60972 5.66525 5.73969 5.82595 5.91996 6.01662 6.11170 6.31388 6.34469 6.44914 6.58304 6.69297 6.77094 6.89616 7.00073 7.83046 7.99890 8.76220 9.23466 10.09704 10.24917 11.39284 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041463 B = 0.008414 C = 0.007926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.133341 B = 3327.121967 C = 3531.621560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.046 4.046 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.328 4.328 8 H 0.065 0.935 9 N -0.733 5.733 10 C 0.181 3.819 11 H 0.054 0.946 12 C -0.136 4.136 13 C -0.110 4.110 14 C -0.104 4.104 15 C -0.076 4.076 16 H 0.112 0.888 17 C 0.483 3.517 18 O -0.520 6.520 19 O -0.517 6.517 20 C -0.107 4.107 21 H 0.253 0.747 22 H 0.365 0.635 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.403 0.597 30 H 0.070 0.930 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -11.427 2.922 11.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.243 4.243 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.459 4.459 8 H 0.083 0.917 9 N -0.377 5.377 10 C 0.071 3.929 11 H 0.072 0.928 12 C -0.176 4.176 13 C -0.148 4.148 14 C -0.141 4.141 15 C -0.095 4.095 16 H 0.130 0.870 17 C 0.326 3.674 18 O -0.408 6.408 19 O -0.328 6.328 20 C -0.145 4.145 21 H 0.064 0.936 22 H 0.199 0.801 23 H 0.064 0.936 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.261 0.739 30 H 0.088 0.912 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.024 -9.581 2.822 9.988 hybrid contribution -0.478 -2.187 -0.307 2.260 sum -0.502 -11.768 2.515 12.044 Atomic orbital electron populations 1.70899 1.06023 1.28244 1.53861 1.25728 0.97049 1.00936 1.00634 0.83252 0.74214 0.75740 0.75807 1.21113 1.22353 1.22336 1.20047 0.92020 0.85791 1.48010 0.91742 1.42489 1.04631 1.00705 1.89847 1.20177 0.94137 0.85433 0.93180 0.92790 1.22164 0.96858 0.99734 0.98880 1.21393 0.96879 0.98758 0.97748 1.21489 1.00381 0.99381 0.92865 1.21096 0.95491 0.95847 0.97109 0.87041 1.23895 0.79423 0.82759 0.81299 1.90681 1.72494 1.51757 1.25895 1.84593 1.32563 1.56940 1.58685 1.21760 0.93953 0.99807 0.98984 0.93565 0.80072 0.93597 0.91827 0.90563 0.92734 0.91275 0.92121 0.73882 0.91169 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.83 13.70 55.49 0.76 -28.07 16 2 C -0.05 -1.32 5.50 -17.43 -0.10 -1.42 16 3 Si 1.08 25.79 29.92 -169.99 -5.09 20.71 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.33 -9.00 9.93 -15.06 -0.15 -9.15 16 8 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.73 -17.67 4.27 -53.42 -0.23 -17.90 16 10 C 0.18 3.55 3.10 -67.93 -0.21 3.34 16 11 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 12 C -0.14 -2.37 5.61 -26.73 -0.15 -2.52 16 13 C -0.11 -1.78 5.77 -26.73 -0.15 -1.94 16 14 C -0.10 -1.48 5.13 -26.73 -0.14 -1.62 16 15 C -0.08 -1.22 2.46 -91.77 -0.23 -1.44 16 16 H 0.11 1.95 6.51 -51.93 -0.34 1.61 16 17 C 0.48 7.38 7.63 36.00 0.27 7.65 16 18 O -0.52 -9.20 16.74 -18.75 -0.31 -9.51 16 19 O -0.52 -6.29 13.33 -39.26 -0.52 -6.82 16 20 C -0.11 -1.85 4.18 -26.73 -0.11 -1.96 16 21 H 0.25 7.58 6.77 -40.82 -0.28 7.30 16 22 H 0.36 9.01 4.89 -40.82 -0.20 8.81 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.08 1.45 7.60 -51.93 -0.39 1.06 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.40 3.02 9.10 45.56 0.41 3.43 16 30 H 0.07 1.32 8.10 -51.93 -0.42 0.89 16 31 H 0.07 1.09 8.10 -51.93 -0.42 0.66 16 LS Contribution 256.24 15.07 3.86 3.86 Total: -1.00 -32.15 256.24 -5.86 -38.01 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -3.37 Total: 8.77 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.96 Total: -9.06 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.53 Total: -45.97 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.84 Total: -16.33 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.09 Total: 20.71 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.15 -5.86 -38.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070502329.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.951 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds