Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47474 * 325.00605 * 10 9 7 12 12 C 1.53007 * 109.46908 * 85.00241 * 10 9 7 13 13 C 1.52998 * 109.47127 * 60.00037 * 12 10 9 14 14 C 1.52995 * 109.47273 * 59.99663 * 13 12 10 15 15 C 1.52999 * 109.47466 * 300.00048 * 14 13 12 16 16 H 1.08995 * 109.47341 * 300.00096 * 15 14 13 17 17 C 1.50695 * 109.47093 * 179.97438 * 15 14 13 18 18 O 1.20828 * 120.00081 * 239.99697 * 17 15 14 19 19 O 1.34231 * 120.00289 * 60.00690 * 17 15 14 20 20 C 1.52998 * 109.47304 * 204.99863 * 10 9 7 21 21 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 22 22 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 23 23 H 1.09004 * 109.46844 * 180.02562 * 12 10 9 24 24 H 1.08998 * 109.46879 * 299.99671 * 12 10 9 25 25 H 1.09005 * 109.46906 * 300.00062 * 13 12 10 26 26 H 1.08997 * 109.46618 * 180.02562 * 13 12 10 27 27 H 1.09001 * 109.47452 * 179.97438 * 14 13 12 28 28 H 1.09005 * 109.46829 * 60.00351 * 14 13 12 29 29 H 0.96698 * 116.99972 * 180.02562 * 19 17 15 30 30 H 1.09005 * 109.46926 * 60.00133 * 20 10 9 31 31 H 1.08994 * 109.47279 * 179.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5505 -0.5888 12 6 2.4220 -4.0355 1.4376 13 6 1.1437 -4.1847 2.2649 14 6 0.2666 -5.2800 1.6553 15 6 -0.0973 -4.9013 0.2183 16 1 -0.6423 -3.9574 0.2182 17 6 -0.9607 -5.9805 -0.3824 18 8 -0.5916 -6.5694 -1.3707 19 8 -2.1401 -6.2874 0.1805 20 6 1.1811 -4.7521 -0.6090 21 1 -0.4850 -0.8401 -0.0004 22 1 0.3556 -2.3881 -0.0002 23 1 2.9675 -4.9793 1.4376 24 1 3.0469 -3.2551 1.8719 25 1 0.5986 -3.2407 2.2649 26 1 1.4030 -4.4541 3.2888 27 1 -0.6440 -5.3867 2.2449 28 1 0.8116 -6.2240 1.6553 29 1 -2.6585 -6.9868 -0.2404 30 1 0.9218 -4.4823 -1.6328 31 1 1.7263 -5.6959 -0.6095 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070502329.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = -122.853692 kcal Electronic energy + Delta-G solvation = -14768.733538 eV Core-core repulsion = 12241.541519 eV Total energy + Delta-G solvation = -2527.192018 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.64056 -39.50222 -37.15054 -35.83496 -32.95648 -32.04287 -29.72310 -25.71059 -25.34434 -23.36377 -22.04658 -20.29538 -19.30961 -19.02788 -17.85967 -16.91575 -16.43886 -15.87718 -15.77806 -15.28243 -15.13331 -14.46467 -13.64913 -13.55954 -13.33672 -13.01258 -12.66026 -12.60813 -12.52970 -12.33150 -11.89383 -11.85468 -11.43085 -11.37386 -11.26830 -11.04252 -10.78046 -9.05950 -8.33916 -5.26672 1.12651 1.59599 1.69118 1.85208 2.06925 2.73870 3.44084 3.58102 3.69228 3.84439 3.94543 4.23281 4.36170 4.41358 4.47936 4.56613 4.69956 4.76264 4.97778 5.04466 5.05709 5.24787 5.32530 5.48239 5.52160 5.57885 5.68536 6.54559 6.96051 7.15008 8.05830 8.17082 9.17994 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041463 B = 0.008414 C = 0.007926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.133341 B = 3327.121967 C = 3531.621560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.107 4.107 3 Si 1.125 2.875 4 H -0.295 1.295 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.323 4.323 8 H 0.065 0.935 9 N -0.743 5.743 10 C 0.173 3.827 11 H 0.043 0.957 12 C -0.129 4.129 13 C -0.106 4.106 14 C -0.094 4.094 15 C -0.077 4.077 16 H 0.091 0.909 17 C 0.494 3.506 18 O -0.547 6.547 19 O -0.507 6.507 20 C -0.097 4.097 21 H 0.243 0.757 22 H 0.360 0.640 23 H 0.079 0.921 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.427 0.573 30 H 0.048 0.952 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.076 -12.849 3.705 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.298 4.298 3 Si 0.950 3.050 4 H -0.221 1.221 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.455 4.455 8 H 0.083 0.917 9 N -0.386 5.386 10 C 0.065 3.935 11 H 0.061 0.939 12 C -0.169 4.169 13 C -0.144 4.144 14 C -0.131 4.131 15 C -0.097 4.097 16 H 0.108 0.892 17 C 0.338 3.662 18 O -0.437 6.437 19 O -0.321 6.321 20 C -0.135 4.135 21 H 0.053 0.947 22 H 0.193 0.807 23 H 0.097 0.903 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.288 0.712 30 H 0.067 0.933 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.496 -11.066 3.615 11.652 hybrid contribution -0.648 -1.842 -0.553 2.029 sum -0.151 -12.908 3.062 13.267 Atomic orbital electron populations 1.70999 1.07116 1.27719 1.56763 1.27056 0.97136 1.04432 1.01127 0.82648 0.73364 0.71958 0.76983 1.22138 1.20750 1.20450 1.20368 0.92263 0.87090 1.45741 0.91708 1.42640 1.04552 1.01499 1.89933 1.20401 0.93741 0.84470 0.94885 0.93900 1.22046 0.97558 1.00537 0.96774 1.21335 0.96054 0.97859 0.99133 1.21453 1.00979 0.99347 0.91367 1.20991 0.94898 0.95511 0.98258 0.89152 1.23515 0.79957 0.82053 0.80645 1.90682 1.73342 1.52771 1.26936 1.84524 1.31446 1.57771 1.58326 1.21593 0.94572 0.99543 0.97795 0.94697 0.80706 0.90299 0.93963 0.94185 0.90282 0.89702 0.89843 0.71151 0.93264 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.02 13.70 21.65 0.30 -60.72 16 2 C -0.11 -6.17 5.50 84.86 0.47 -5.70 16 3 Si 1.12 52.20 29.92 68.60 2.05 54.26 16 4 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.32 -17.95 9.93 84.03 0.83 -17.12 16 8 H 0.06 3.53 7.83 -2.91 -0.02 3.50 16 9 N -0.74 -36.46 4.27 -322.93 -1.38 -37.84 16 10 C 0.17 6.74 3.10 44.99 0.14 6.88 16 11 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 12 C -0.13 -4.29 5.61 30.60 0.17 -4.12 16 13 C -0.11 -3.24 5.77 30.59 0.18 -3.06 16 14 C -0.09 -2.43 5.13 30.59 0.16 -2.27 16 15 C -0.08 -2.37 2.46 -11.54 -0.03 -2.40 16 16 H 0.09 3.20 6.51 -2.39 -0.02 3.18 16 17 C 0.49 14.13 7.63 71.23 0.54 14.67 16 18 O -0.55 -18.41 16.74 21.96 0.37 -18.04 16 19 O -0.51 -10.95 13.33 -51.42 -0.69 -11.64 16 20 C -0.10 -3.27 4.18 30.59 0.13 -3.14 16 21 H 0.24 15.05 6.77 -92.71 -0.63 14.43 16 22 H 0.36 18.36 4.89 -92.71 -0.45 17.91 16 23 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.04 1.51 7.60 -2.38 -0.02 1.50 16 26 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.08 1.97 8.11 -2.39 -0.02 1.95 16 28 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.43 5.04 9.10 -74.06 -0.67 4.37 16 30 H 0.05 1.85 8.10 -2.38 -0.02 1.83 16 31 H 0.09 2.63 8.10 -2.39 -0.02 2.61 16 Total: -1.00 -69.32 256.24 3.39 -65.92 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.15 Total: 24.32 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 2.59 Total: -16.26 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -1.08 Total: -98.56 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.32 Total: -29.68 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 2.05 Total: 54.26 kcal Total: -69.32 3.39 -65.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070502329.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.929 kcal (2) G-P(sol) polarization free energy of solvation -69.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds