Wall clock time and date at job start Mon Mar 30 2020 02:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47007 * 180.02562 * 11 10 9 13 13 C 1.47477 * 110.99758 * 74.02898 * 12 11 10 14 14 C 1.53511 * 87.93211 * 138.70518 * 13 12 11 15 15 C 1.50704 * 114.17273 * 220.32714 * 14 13 12 16 16 O 1.20825 * 119.99797 * 93.83549 * 15 14 13 17 17 O 1.34225 * 119.99988 * 273.83885 * 15 14 13 18 18 C 1.47476 * 110.99984 * 169.99752 * 12 11 10 19 19 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 21 21 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 22 22 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 23 23 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 24 24 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 25 25 H 1.08994 * 109.47235 * 60.00181 * 11 10 9 26 26 H 1.08999 * 113.47519 * 253.46851 * 13 12 11 27 27 H 1.09001 * 113.48108 * 23.94054 * 13 12 11 28 28 H 1.09002 * 114.17223 * 87.61743 * 14 13 12 29 29 H 0.96705 * 116.99701 * 179.97438 * 17 15 14 30 30 H 1.09001 * 113.48082 * 336.07080 * 18 12 11 31 31 H 1.09006 * 113.47103 * 106.52942 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 6 1.4801 -4.9871 -0.0075 12 7 2.4347 -6.1037 -0.0141 13 6 3.0720 -6.2620 1.3064 14 6 2.9205 -7.7801 1.1357 15 6 2.5102 -8.5045 2.3919 16 8 1.3422 -8.7268 2.6068 17 8 3.4422 -8.9025 3.2719 18 6 1.7486 -7.3870 0.2254 19 1 -0.4851 0.8401 0.0004 20 1 0.6283 -2.5592 0.8921 21 1 0.6202 -2.5546 -0.8878 22 1 2.8677 -3.6020 -0.9008 23 1 2.8758 -3.6067 0.8792 24 1 0.8578 -5.0469 0.8854 25 1 0.8491 -5.0427 -0.8945 26 1 4.1096 -5.9292 1.3304 27 1 2.4793 -5.8560 2.1262 28 1 3.7510 -8.2556 0.6138 29 1 3.1306 -9.3631 4.0631 30 1 0.8026 -7.2812 0.7565 31 1 1.6646 -8.0076 -0.6668 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070569829.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:26 Heat of formation + Delta-G solvation = -95.463113 kcal Electronic energy + Delta-G solvation = -13806.773687 eV Core-core repulsion = 11280.769414 eV Total energy + Delta-G solvation = -2526.004273 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.05926 -40.19010 -37.12294 -36.12615 -34.05152 -30.97665 -27.93609 -27.00200 -25.28226 -23.09621 -21.72387 -20.68953 -19.23875 -18.55693 -17.92592 -17.10804 -16.66946 -16.48927 -15.73955 -15.40285 -15.02784 -14.37401 -13.86934 -13.78784 -13.52081 -13.30146 -12.78247 -12.62189 -12.54313 -12.35208 -12.13460 -11.81925 -11.66484 -11.45395 -11.36567 -11.06464 -10.55463 -10.03219 -8.20365 -6.31915 1.07912 1.40391 1.43761 1.51737 2.00743 2.41249 2.97154 3.12809 3.16643 3.78915 3.99883 4.05575 4.23257 4.36297 4.42792 4.62188 4.66294 4.70439 4.83596 4.97009 5.03872 5.16323 5.31620 5.50586 5.56172 5.71230 5.84160 5.91104 6.24680 6.84657 6.95550 7.37578 8.91472 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060322 B = 0.004996 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.065989 B = 5602.857886 C = 5697.622463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.024 3.976 10 C -0.088 4.088 11 C 0.031 3.969 12 N -0.474 5.474 13 C 0.015 3.985 14 C -0.103 4.103 15 C 0.498 3.502 16 O -0.550 6.550 17 O -0.505 6.505 18 C 0.013 3.987 19 H 0.264 0.736 20 H -0.011 1.011 21 H -0.008 1.008 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.164 0.836 29 H 0.428 0.572 30 H 0.070 0.930 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.753 -16.813 4.029 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.126 4.126 11 C -0.097 4.097 12 N -0.196 5.196 13 C -0.114 4.114 14 C -0.123 4.123 15 C 0.341 3.659 16 O -0.441 6.441 17 O -0.319 6.319 18 C -0.115 4.115 19 H 0.072 0.928 20 H 0.007 0.993 21 H 0.010 0.990 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.130 0.870 27 H 0.083 0.917 28 H 0.182 0.818 29 H 0.290 0.710 30 H 0.088 0.912 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.817 -16.427 3.127 18.459 hybrid contribution -0.949 0.695 1.266 1.728 sum 6.868 -15.732 4.393 17.719 Atomic orbital electron populations 1.70097 1.07878 1.27876 1.51646 1.26005 0.95773 1.03462 0.94639 0.85478 0.78257 0.77930 0.79255 1.19075 1.20819 1.19104 1.21661 0.93574 0.92321 1.50663 0.92114 1.18989 0.94442 0.93215 0.94733 1.21319 0.97940 0.92409 1.00924 1.22610 0.94559 0.91792 1.00780 1.69006 1.21033 1.01759 1.27834 1.23784 1.03306 0.92128 0.92183 1.22682 1.02521 0.95570 0.91480 1.23299 0.82985 0.74885 0.84736 1.90729 1.21548 1.54752 1.77041 1.84510 1.41783 1.70488 1.35094 1.23842 0.95732 0.92284 0.99681 0.92755 0.99269 0.98951 0.92587 0.93037 0.94792 0.90892 0.86999 0.91729 0.81817 0.70999 0.91220 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.29 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.69 5.26 30.59 0.16 -3.53 16 11 C 0.03 1.08 4.82 86.30 0.42 1.50 16 12 N -0.47 -13.33 6.41 -928.00 -5.95 -19.29 16 13 C 0.01 0.36 6.57 83.57 0.55 0.91 16 14 C -0.10 -1.97 4.59 -11.20 -0.05 -2.03 16 15 C 0.50 10.19 7.89 71.24 0.56 10.75 16 16 O -0.55 -15.18 16.70 21.97 0.37 -14.81 16 17 O -0.51 -7.29 13.42 -51.37 -0.69 -7.98 16 18 C 0.01 0.31 7.06 83.57 0.59 0.90 16 19 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 20 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 21 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 22 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.05 2.09 7.67 -2.39 -0.02 2.07 16 24 H 0.03 1.22 7.56 -2.39 -0.02 1.20 16 25 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 26 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.06 1.70 7.66 -2.39 -0.02 1.68 16 28 H 0.16 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.43 2.60 9.10 -74.05 -0.67 1.93 16 30 H 0.07 1.86 7.08 -2.39 -0.02 1.84 16 31 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -70.43 268.53 -0.45 -70.87 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 0.45 Total: 2.98 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 3.07 Total: -20.95 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -5.67 Total: -76.73 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.32 Total: -22.80 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -70.43 -0.45 -70.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070569829.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.589 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds