Wall clock time and date at job start Mon Mar 30 2020 02:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.87942 * 2 1 4 4 O 1.20822 * 120.00180 * 106.26965 * 3 2 1 5 5 O 1.34240 * 119.99730 * 286.26402 * 3 2 1 6 6 C 1.54319 * 110.02225 * 121.11879 * 2 1 3 7 7 C 1.55139 * 103.02488 * 97.19678 * 6 2 1 8 8 C 1.54910 * 101.65082 * 35.65223 * 7 6 2 9 9 N 1.47449 * 109.88787 * 238.96430 * 2 1 3 10 10 C 1.46898 * 110.99474 * 117.17753 * 9 2 1 11 11 C 1.50703 * 109.46764 * 170.18021 * 10 9 2 12 12 H 1.08000 * 120.00042 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99941 * 179.71945 * 11 10 9 14 14 N 1.31514 * 120.00025 * 0.27906 * 13 11 10 15 15 Si 1.86798 * 120.00138 * 180.27220 * 13 11 10 16 16 H 1.48506 * 109.46871 * 60.00656 * 15 13 11 17 17 H 1.48502 * 109.47331 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47416 * 300.00814 * 15 13 11 19 19 H 1.09000 * 109.47014 * 181.03123 * 1 2 3 20 20 H 1.08992 * 109.47441 * 301.03609 * 1 2 3 21 21 H 1.09003 * 109.47331 * 61.03971 * 1 2 3 22 22 H 0.96698 * 116.99714 * 179.97438 * 5 3 2 23 23 H 1.08998 * 110.70199 * 215.58657 * 6 2 1 24 24 H 1.09006 * 110.70426 * 338.80924 * 6 2 1 25 25 H 1.08999 * 110.99149 * 153.74403 * 7 6 2 26 26 H 1.09002 * 110.99042 * 277.52798 * 7 6 2 27 27 H 1.08999 * 110.37485 * 204.10313 * 8 7 6 28 28 H 1.09002 * 110.37445 * 81.75790 * 8 7 6 29 29 H 1.09001 * 109.47389 * 50.17997 * 10 9 2 30 30 H 1.08997 * 109.47105 * 290.17658 * 10 9 2 31 31 H 0.96999 * 120.00179 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0424 1.4171 0.0000 4 8 2.5235 1.8856 1.0044 5 8 1.9644 2.1590 -1.1161 6 6 2.0584 -0.7493 1.2413 7 6 2.3560 -2.1694 0.6920 8 6 2.8618 -1.8523 -0.7374 9 7 2.0316 -0.7149 -1.1881 10 6 2.7997 0.1852 -2.0586 11 6 3.4942 -0.6203 -3.1262 12 1 3.3771 -1.6936 -3.1549 13 6 4.2749 0.0134 -4.0695 14 7 4.4180 1.3203 -4.0343 15 14 5.1297 -0.9842 -5.3975 16 1 4.1143 -1.7106 -6.2016 17 1 5.9023 -0.0739 -6.2805 18 1 6.0524 -1.9614 -4.7658 19 1 -0.3633 -1.0275 0.0185 20 1 -0.3634 0.5298 0.8805 21 1 -0.3634 0.4976 -0.8992 22 1 2.3058 3.0624 -1.0674 23 1 2.9693 -0.2818 1.6148 24 1 1.2971 -0.7892 2.0204 25 1 3.1308 -2.6611 1.2802 26 1 1.4495 -2.7739 0.6608 27 1 2.7148 -2.7118 -1.3914 28 1 3.9138 -1.5681 -0.7134 29 1 3.5422 0.7186 -1.4651 30 1 2.1247 0.9023 -2.5258 31 1 4.9675 1.7661 -4.6978 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070618217.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:08 Heat of formation + Delta-G solvation = -103.479337 kcal Electronic energy + Delta-G solvation = -15197.829285 eV Core-core repulsion = 12671.477402 eV Total energy + Delta-G solvation = -2526.351883 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.03937 -39.25034 -37.30891 -35.15976 -32.78774 -32.34787 -28.22709 -27.16158 -24.71308 -24.18510 -22.09192 -20.42749 -19.06993 -18.40261 -17.74164 -16.91351 -16.40480 -16.07919 -15.58048 -15.15033 -14.42518 -14.06095 -13.86030 -13.49549 -13.33555 -13.14073 -12.86630 -12.65671 -12.51122 -12.45429 -12.12834 -11.88294 -11.74047 -11.53736 -11.50348 -10.96093 -10.58788 -9.14498 -8.19199 -6.28558 1.12823 1.40755 1.43558 1.50986 2.16649 2.40035 3.13979 3.17481 3.54878 3.80136 4.14009 4.28679 4.32016 4.56467 4.74436 4.81000 4.91454 4.94695 5.07186 5.11700 5.13062 5.31356 5.37205 5.47354 5.55374 5.63675 6.01181 6.23149 6.50883 6.87065 6.96710 7.39720 8.91334 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036200 B = 0.011082 C = 0.009430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.299303 B = 2525.956857 C = 2968.446740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.093 3.907 3 C 0.475 3.525 4 O -0.556 6.556 5 O -0.495 6.495 6 C -0.121 4.121 7 C -0.115 4.115 8 C 0.048 3.952 9 N -0.516 5.516 10 C 0.205 3.795 11 C -0.537 4.537 12 H 0.066 0.934 13 C 0.004 3.996 14 N -0.927 5.927 15 Si 0.965 3.035 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.270 1.270 19 H 0.094 0.906 20 H 0.075 0.925 21 H 0.055 0.945 22 H 0.405 0.595 23 H 0.055 0.945 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.020 0.980 29 H -0.045 1.045 30 H 0.043 0.957 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.330 -4.664 8.002 11.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.001 3.999 3 C 0.319 3.681 4 O -0.447 6.447 5 O -0.306 6.306 6 C -0.159 4.159 7 C -0.153 4.153 8 C -0.080 4.080 9 N -0.242 5.242 10 C 0.079 3.921 11 C -0.575 4.575 12 H 0.084 0.916 13 C -0.194 4.194 14 N -0.566 5.566 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.195 1.195 19 H 0.113 0.887 20 H 0.094 0.906 21 H 0.074 0.926 22 H 0.264 0.736 23 H 0.074 0.926 24 H 0.128 0.872 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.098 0.902 28 H 0.039 0.961 29 H -0.027 1.027 30 H 0.061 0.939 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.691 -4.950 7.844 11.437 hybrid contribution 1.780 1.175 -0.502 2.192 sum -4.911 -3.775 7.342 9.605 Atomic orbital electron populations 1.21726 0.88852 1.04618 1.02233 1.22320 0.99631 0.84339 0.93564 1.24485 0.73768 0.90309 0.79555 1.90591 1.44252 1.74282 1.35553 1.85143 1.77117 1.30483 1.37860 1.22830 1.01961 0.95582 0.95546 1.22779 1.02968 0.95638 0.93885 1.22974 0.94639 0.94020 0.96337 1.63894 1.37791 1.09280 1.13195 1.19969 0.90525 0.90892 0.90699 1.21623 1.28770 0.94407 1.12727 0.91604 1.25865 0.97357 0.96006 1.00199 1.70083 1.40329 1.09536 1.36691 0.85500 0.78553 0.78329 0.78623 1.19121 1.21022 1.19457 0.88738 0.90578 0.92588 0.73556 0.92572 0.87206 0.88908 0.88131 0.90165 0.96147 1.02741 0.93915 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.29 8.69 71.98 0.63 -2.66 16 2 C 0.09 3.33 1.11 3.12 0.00 3.34 16 3 C 0.48 19.55 5.60 71.23 0.40 19.95 16 4 O -0.56 -24.24 16.37 21.97 0.36 -23.88 16 5 O -0.50 -20.53 9.44 -51.51 -0.49 -21.02 16 6 C -0.12 -3.63 5.71 31.77 0.18 -3.45 16 7 C -0.12 -3.10 7.08 31.98 0.23 -2.87 16 8 C 0.05 1.82 5.39 86.77 0.47 2.29 16 9 N -0.52 -21.98 4.93 -845.17 -4.17 -26.15 16 10 C 0.20 10.83 3.25 85.56 0.28 11.11 16 11 C -0.54 -30.26 8.35 25.60 0.21 -30.04 16 12 H 0.07 3.57 6.67 -2.91 -0.02 3.55 16 13 C 0.00 0.25 5.46 84.65 0.46 0.71 16 14 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 15 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 20 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.40 13.72 9.10 -74.06 -0.67 13.05 16 23 H 0.06 1.94 7.12 -2.39 -0.02 1.93 16 24 H 0.11 2.56 7.83 -2.38 -0.02 2.54 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.08 2.95 7.69 -2.39 -0.02 2.93 16 28 H 0.02 0.88 7.56 -2.39 -0.02 0.86 16 29 H -0.04 -2.63 6.42 -2.39 -0.02 -2.65 16 30 H 0.04 2.46 6.20 -2.39 -0.01 2.44 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -68.49 253.16 1.33 -67.16 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.46 Total: 14.50 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 2.86 Total: -1.63 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -3.89 Total: -81.27 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.13 Total: -44.90 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.49 1.33 -67.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070618217.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.316 kcal (2) G-P(sol) polarization free energy of solvation -68.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds