Wall clock time and date at job start Mon Mar 30 2020 02:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86806 * 120.00047 * 2 1 4 4 H 1.48508 * 109.46968 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47155 * 119.99912 * 3 2 1 6 6 H 1.48499 * 109.47061 * 239.99966 * 3 2 1 7 7 C 1.40049 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99620 * 4.67287 * 7 2 1 9 9 C 1.46373 * 119.99920 * 184.67678 * 7 2 1 10 10 O 1.21685 * 120.00597 * 6.24481 * 9 7 2 11 11 N 1.34783 * 119.99423 * 186.24716 * 9 7 2 12 12 C 1.46503 * 119.99532 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.46847 * 179.97438 * 12 11 9 14 14 H 1.09003 * 110.43882 * 305.70240 * 13 12 11 15 15 C 1.54896 * 110.48624 * 68.24422 * 13 12 11 16 16 C 1.55031 * 102.68207 * 156.51584 * 15 13 12 17 17 C 1.54269 * 104.28152 * 322.23164 * 16 15 13 18 18 C 1.53876 * 106.59581 * 23.51981 * 17 16 15 19 19 H 1.09006 * 110.02855 * 119.28136 * 18 17 16 20 20 O 1.42894 * 110.07416 * 240.68679 * 18 17 16 21 21 H 0.96997 * 120.00168 * 174.90298 * 1 2 3 22 22 H 0.96999 * 120.00271 * 359.97438 * 11 9 7 23 23 H 1.08998 * 109.47491 * 300.00280 * 12 11 9 24 24 H 1.08998 * 109.47345 * 60.00210 * 12 11 9 25 25 H 1.08997 * 110.75673 * 274.93826 * 15 13 12 26 26 H 1.08994 * 110.75243 * 38.30608 * 15 13 12 27 27 H 1.09003 * 110.51897 * 203.49018 * 16 15 13 28 28 H 1.09000 * 110.47947 * 80.96015 * 16 15 13 29 29 H 1.08997 * 110.03117 * 264.23543 * 17 16 15 30 30 H 1.09003 * 110.06745 * 142.82801 * 17 16 15 31 31 H 0.96705 * 114.00112 * 297.19777 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0945 1.6965 1.2125 6 1 3.0945 1.6964 -1.2125 7 6 2.0070 -1.2128 0.0005 8 1 1.4697 -2.1466 -0.0752 9 6 3.4671 -1.2148 0.1039 10 8 4.0644 -0.1736 0.3034 11 7 4.1499 -2.3700 -0.0219 12 6 5.6113 -2.3719 0.0810 13 6 6.1331 -3.7992 -0.0965 14 1 5.6464 -4.4729 0.6087 15 6 5.9077 -4.2818 -1.5510 16 6 6.9790 -5.3909 -1.7115 17 6 8.2022 -4.8528 -0.9407 18 6 7.6644 -3.8408 0.0860 19 1 7.9112 -4.1671 1.0964 20 8 8.2221 -2.5485 -0.1605 21 1 -0.4850 -0.8367 -0.0746 22 1 3.6738 -3.2001 -0.1806 23 1 6.0311 -1.7320 -0.6951 24 1 5.9071 -1.9966 1.0606 25 1 4.9044 -4.6905 -1.6713 26 1 6.0832 -3.4714 -2.2584 27 1 7.2245 -5.5356 -2.7636 28 1 6.6304 -6.3246 -1.2701 29 1 8.8887 -4.3584 -1.6281 30 1 8.7108 -5.6698 -0.4288 31 1 9.1833 -2.5095 -0.0615 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084239055.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:41 Heat of formation + Delta-G solvation = -123.901121 kcal Electronic energy + Delta-G solvation = -14360.136908 eV Core-core repulsion = 11832.899470 eV Total energy + Delta-G solvation = -2527.237438 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.19677 -37.52061 -35.01487 -33.39655 -32.72437 -29.54887 -27.74108 -26.24279 -23.59158 -20.84787 -19.84681 -19.58999 -17.91549 -17.34373 -15.70915 -15.07034 -14.84338 -14.61663 -13.97729 -13.80694 -13.53403 -12.82190 -12.49669 -12.39000 -11.97589 -11.85066 -11.21375 -11.14674 -10.63843 -10.58318 -10.52189 -10.22900 -10.09987 -9.91391 -9.13285 -8.89473 -7.83801 -7.76083 -6.90915 -4.84199 3.66618 3.75544 4.14636 4.21297 4.38120 4.45306 4.52408 4.62682 4.80786 4.95247 5.25026 5.32103 5.45424 5.55621 5.58356 5.59823 5.76814 5.78193 5.95040 5.99337 6.18189 6.32839 6.54464 6.73219 7.59535 7.67027 7.80373 7.88515 8.19480 8.91919 9.19560 10.18277 10.41103 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054880 B = 0.007300 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.081721 B = 3834.782037 C = 4177.810763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.060 3.940 3 Si 1.131 2.869 4 H -0.324 1.324 5 H -0.281 1.281 6 H -0.292 1.292 7 C -0.601 4.601 8 H 0.068 0.932 9 C 0.552 3.448 10 O -0.618 6.618 11 N -0.758 5.758 12 C 0.148 3.852 13 C -0.097 4.097 14 H 0.084 0.916 15 C -0.117 4.117 16 C -0.123 4.123 17 C -0.156 4.156 18 C 0.107 3.893 19 H 0.056 0.944 20 O -0.554 6.554 21 H 0.276 0.724 22 H 0.384 0.616 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.285 -11.442 -1.827 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.157 4.157 3 Si 0.964 3.036 4 H -0.256 1.256 5 H -0.208 1.208 6 H -0.219 1.219 7 C -0.637 4.637 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.511 6.511 11 N -0.410 5.410 12 C 0.024 3.976 13 C -0.116 4.116 14 H 0.103 0.897 15 C -0.155 4.155 16 C -0.160 4.160 17 C -0.194 4.194 18 C 0.047 3.953 19 H 0.074 0.926 20 O -0.359 6.359 21 H 0.087 0.913 22 H 0.216 0.784 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 13.845 -9.055 -1.727 16.633 hybrid contribution 0.525 -2.699 -0.039 2.750 sum 14.370 -11.754 -1.766 18.648 Atomic orbital electron populations 1.70658 1.07597 1.31863 1.36357 1.27148 0.95321 1.05011 0.88204 0.82367 0.71313 0.70731 0.79188 1.25554 1.20844 1.21896 1.22052 0.90097 0.96228 1.55339 0.91327 1.18437 0.88625 0.81472 0.75505 1.90139 1.70760 1.31318 1.58869 1.45799 1.05288 1.10576 1.79307 1.20722 0.81917 0.93648 1.01331 1.22307 0.93184 0.98373 0.97765 0.89736 1.22594 0.98614 0.98024 0.96236 1.22329 0.95294 0.98417 0.99986 1.22931 0.98668 0.99106 0.98712 1.22388 0.93510 0.82919 0.96466 0.92624 1.86676 1.25381 1.30512 1.93345 0.91350 0.78426 0.91976 0.93151 0.91224 0.90820 0.91694 0.91710 0.90901 0.91651 0.78192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.93 13.64 55.55 0.76 -24.17 16 2 C 0.06 1.80 5.52 -17.37 -0.10 1.70 16 3 Si 1.13 31.20 25.99 -169.99 -4.42 26.78 16 4 H -0.32 -8.52 7.11 56.52 0.40 -8.12 16 5 H -0.28 -8.01 6.78 56.52 0.38 -7.63 16 6 H -0.29 -8.09 7.11 56.52 0.40 -7.69 16 7 C -0.60 -17.65 9.96 -35.63 -0.36 -18.01 16 8 H 0.07 1.97 8.05 -52.49 -0.42 1.55 16 9 C 0.55 15.48 7.57 -12.98 -0.10 15.38 16 10 O -0.62 -18.86 12.07 5.20 0.06 -18.80 16 11 N -0.76 -16.98 5.41 -61.72 -0.33 -17.32 16 12 C 0.15 2.90 4.30 -4.04 -0.02 2.89 16 13 C -0.10 -1.38 2.88 -88.96 -0.26 -1.64 16 14 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 15 C -0.12 -1.53 6.11 -24.66 -0.15 -1.68 16 16 C -0.12 -1.24 6.83 -24.99 -0.17 -1.42 16 17 C -0.16 -1.49 6.61 -25.61 -0.17 -1.66 16 18 C 0.11 1.26 4.12 -25.61 -0.11 1.15 16 19 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 20 O -0.55 -7.22 11.69 -35.23 -0.41 -7.63 16 21 H 0.28 7.87 8.72 -40.82 -0.36 7.52 16 22 H 0.38 7.60 8.36 -40.82 -0.34 7.26 16 23 H 0.06 1.35 7.54 -51.93 -0.39 0.96 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.67 7.96 -51.93 -0.41 0.26 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.37 3.01 9.11 45.56 0.42 3.42 16 LS Contribution 258.46 15.07 3.89 3.89 Total: -1.00 -34.34 258.46 -5.57 -39.91 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -3.70 Total: 0.61 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.42 Total: -3.28 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.42 Total: -41.48 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.35 Total: -26.43 kcal Atomic # 14 Polarization: 31.20 SS G_CDS: -4.42 Total: 26.78 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -34.34 -5.57 -39.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084239055.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.993 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds