Wall clock time and date at job start Mon Mar 30 2020 02:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86806 * 120.00047 * 2 1 4 4 H 1.48508 * 109.46968 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47155 * 119.99912 * 3 2 1 6 6 H 1.48499 * 109.47061 * 239.99966 * 3 2 1 7 7 C 1.40049 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99620 * 4.67287 * 7 2 1 9 9 C 1.46373 * 119.99920 * 184.67678 * 7 2 1 10 10 O 1.21685 * 120.00597 * 6.24481 * 9 7 2 11 11 N 1.34783 * 119.99423 * 186.24716 * 9 7 2 12 12 C 1.46503 * 119.99532 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.46847 * 179.97438 * 12 11 9 14 14 H 1.09003 * 110.43882 * 305.70240 * 13 12 11 15 15 C 1.54896 * 110.48624 * 68.24422 * 13 12 11 16 16 C 1.55031 * 102.68207 * 156.51584 * 15 13 12 17 17 C 1.54269 * 104.28152 * 322.23164 * 16 15 13 18 18 C 1.53876 * 106.59581 * 23.51981 * 17 16 15 19 19 H 1.09006 * 110.02855 * 119.28136 * 18 17 16 20 20 O 1.42894 * 110.07416 * 240.68679 * 18 17 16 21 21 H 0.96997 * 120.00168 * 174.90298 * 1 2 3 22 22 H 0.96999 * 120.00271 * 359.97438 * 11 9 7 23 23 H 1.08998 * 109.47491 * 300.00280 * 12 11 9 24 24 H 1.08998 * 109.47345 * 60.00210 * 12 11 9 25 25 H 1.08997 * 110.75673 * 274.93826 * 15 13 12 26 26 H 1.08994 * 110.75243 * 38.30608 * 15 13 12 27 27 H 1.09003 * 110.51897 * 203.49018 * 16 15 13 28 28 H 1.09000 * 110.47947 * 80.96015 * 16 15 13 29 29 H 1.08997 * 110.03117 * 264.23543 * 17 16 15 30 30 H 1.09003 * 110.06745 * 142.82801 * 17 16 15 31 31 H 0.96705 * 114.00112 * 297.19777 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0945 1.6965 1.2125 6 1 3.0945 1.6964 -1.2125 7 6 2.0070 -1.2128 0.0005 8 1 1.4697 -2.1466 -0.0752 9 6 3.4671 -1.2148 0.1039 10 8 4.0644 -0.1736 0.3034 11 7 4.1499 -2.3700 -0.0219 12 6 5.6113 -2.3719 0.0810 13 6 6.1331 -3.7992 -0.0965 14 1 5.6464 -4.4729 0.6087 15 6 5.9077 -4.2818 -1.5510 16 6 6.9790 -5.3909 -1.7115 17 6 8.2022 -4.8528 -0.9407 18 6 7.6644 -3.8408 0.0860 19 1 7.9112 -4.1671 1.0964 20 8 8.2221 -2.5485 -0.1605 21 1 -0.4850 -0.8367 -0.0746 22 1 3.6738 -3.2001 -0.1806 23 1 6.0311 -1.7320 -0.6951 24 1 5.9071 -1.9966 1.0606 25 1 4.9044 -4.6905 -1.6713 26 1 6.0832 -3.4714 -2.2584 27 1 7.2245 -5.5356 -2.7636 28 1 6.6304 -6.3246 -1.2701 29 1 8.8887 -4.3584 -1.6281 30 1 8.7108 -5.6698 -0.4288 31 1 9.1833 -2.5095 -0.0615 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084239055.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:40 Heat of formation + Delta-G solvation = -151.583613 kcal Electronic energy + Delta-G solvation = -14361.337311 eV Core-core repulsion = 11832.899470 eV Total energy + Delta-G solvation = -2528.437841 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.43700 -39.42158 -36.16291 -35.20244 -34.86427 -30.99220 -28.65870 -28.26532 -25.13039 -22.05036 -21.38812 -21.01427 -20.01300 -18.40952 -17.42182 -16.67762 -16.38090 -15.79572 -15.72452 -15.40564 -15.05966 -14.50671 -14.29667 -14.14302 -13.44206 -13.25640 -12.59104 -12.41329 -12.15838 -12.03993 -11.81118 -11.62095 -11.39497 -11.34201 -11.20620 -10.79890 -10.11014 -9.73755 -9.21708 -7.15318 1.41955 1.52809 1.95283 2.19830 2.40685 2.89567 3.28091 3.32544 3.59805 3.72089 3.93287 4.33454 4.38690 4.46099 4.46576 4.62576 4.82724 4.86577 4.94941 5.03791 5.15227 5.18011 5.34361 5.42267 5.46805 5.51758 5.88576 6.02671 6.61865 6.98705 7.17134 7.99579 8.10250 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054880 B = 0.007300 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.081721 B = 3834.782037 C = 4177.810763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.030 3.970 3 Si 1.162 2.838 4 H -0.303 1.303 5 H -0.298 1.298 6 H -0.298 1.298 7 C -0.617 4.617 8 H 0.069 0.931 9 C 0.545 3.455 10 O -0.646 6.646 11 N -0.743 5.743 12 C 0.154 3.846 13 C -0.096 4.096 14 H 0.100 0.900 15 C -0.120 4.120 16 C -0.117 4.117 17 C -0.148 4.148 18 C 0.105 3.895 19 H 0.073 0.927 20 O -0.584 6.584 21 H 0.278 0.722 22 H 0.398 0.602 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.535 -13.068 -1.908 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.185 4.185 3 Si 0.993 3.007 4 H -0.233 1.233 5 H -0.226 1.226 6 H -0.226 1.226 7 C -0.654 4.654 8 H 0.087 0.913 9 C 0.351 3.649 10 O -0.541 6.541 11 N -0.393 5.393 12 C 0.030 3.970 13 C -0.115 4.115 14 H 0.118 0.882 15 C -0.158 4.158 16 C -0.154 4.154 17 C -0.186 4.186 18 C 0.046 3.954 19 H 0.091 0.909 20 O -0.392 6.392 21 H 0.089 0.911 22 H 0.233 0.767 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 15.099 -10.724 -1.817 18.609 hybrid contribution 0.168 -2.230 -0.008 2.237 sum 15.267 -12.954 -1.826 20.105 Atomic orbital electron populations 1.70656 1.07655 1.32149 1.37056 1.27765 0.95745 1.06699 0.88284 0.81956 0.70662 0.70089 0.77974 1.23322 1.22645 1.22592 1.22239 0.91130 0.96259 1.55753 0.91312 1.18426 0.88595 0.82498 0.75363 1.90121 1.71286 1.32754 1.59945 1.45581 1.06724 1.09639 1.77368 1.20754 0.79719 0.97170 0.99376 1.22350 0.95367 0.94690 0.99069 0.88167 1.22584 0.99969 0.98484 0.94755 1.22324 0.94326 0.97788 1.00967 1.22880 0.98429 0.99096 0.98151 1.22478 0.91502 0.83131 0.98289 0.90878 1.86621 1.27460 1.31546 1.93569 0.91122 0.76743 0.94437 0.94874 0.91155 0.93166 0.90813 0.90020 0.90613 0.89076 0.75850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.03 13.64 21.84 0.30 -49.73 16 2 C 0.03 1.76 5.52 85.31 0.47 2.23 16 3 Si 1.16 63.42 25.99 68.60 1.78 65.20 16 4 H -0.30 -15.32 7.11 99.48 0.71 -14.62 16 5 H -0.30 -17.02 6.78 99.48 0.67 -16.34 16 6 H -0.30 -16.44 7.11 99.48 0.71 -15.73 16 7 C -0.62 -36.27 9.96 24.83 0.25 -36.03 16 8 H 0.07 3.94 8.05 -2.91 -0.02 3.92 16 9 C 0.55 30.67 7.57 86.36 0.65 31.33 16 10 O -0.65 -39.77 12.07 -4.30 -0.05 -39.83 16 11 N -0.74 -33.01 5.41 -467.41 -2.53 -35.54 16 12 C 0.15 5.99 4.30 86.38 0.37 6.36 16 13 C -0.10 -2.56 2.88 -9.72 -0.03 -2.59 16 14 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 15 C -0.12 -2.93 6.11 31.94 0.20 -2.74 16 16 C -0.12 -1.98 6.83 31.72 0.22 -1.76 16 17 C -0.15 -2.29 6.61 31.32 0.21 -2.08 16 18 C 0.11 2.22 4.12 31.32 0.13 2.34 16 19 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 20 O -0.58 -14.42 11.69 -148.98 -1.74 -16.17 16 21 H 0.28 15.79 8.72 -92.71 -0.81 14.98 16 22 H 0.40 15.39 8.36 -92.71 -0.78 14.61 16 23 H 0.04 1.65 7.54 -2.39 -0.02 1.63 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.05 1.45 8.00 -2.39 -0.02 1.43 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.16 7.96 -2.39 -0.02 1.14 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.39 5.66 9.11 -74.05 -0.67 4.98 16 Total: -1.00 -72.93 258.46 -0.17 -73.10 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -0.39 Total: 5.89 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 2.46 Total: -2.92 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -2.23 Total: -85.28 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -1.79 Total: -55.99 kcal Atomic # 14 Polarization: 63.42 SS G_CDS: 1.78 Total: 65.20 kcal Total: -72.93 -0.17 -73.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084239055.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.483 kcal (2) G-P(sol) polarization free energy of solvation -72.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds