Wall clock time and date at job start Mon Mar 30 2020 02:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86797 * 120.00100 * 2 1 4 4 H 1.48498 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47240 * 300.00482 * 3 2 1 6 6 H 1.48504 * 109.47004 * 60.00056 * 3 2 1 7 7 C 1.40052 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99655 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00135 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99729 * 179.97438 * 9 7 2 12 12 C 1.46507 * 119.99944 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47152 * 180.02562 * 12 11 9 14 14 H 1.09001 * 110.53587 * 307.61149 * 13 12 11 15 15 C 1.54887 * 110.48548 * 70.22343 * 13 12 11 16 16 C 1.54893 * 102.74533 * 156.62347 * 15 13 12 17 17 C 1.54266 * 104.19500 * 322.05712 * 16 15 13 18 18 C 1.53872 * 106.60044 * 23.61099 * 17 16 15 19 19 H 1.09003 * 110.03622 * 240.71485 * 18 17 16 20 20 O 1.42898 * 110.03547 * 119.28222 * 18 17 16 21 21 H 0.97002 * 120.00277 * 359.97438 * 1 2 3 22 22 H 0.97002 * 120.00133 * 0.02562 * 11 9 7 23 23 H 1.09005 * 109.47023 * 60.00084 * 12 11 9 24 24 H 1.08994 * 109.46876 * 300.00501 * 12 11 9 25 25 H 1.09001 * 110.75744 * 274.93249 * 15 13 12 26 26 H 1.09000 * 110.75698 * 38.31067 * 15 13 12 27 27 H 1.09002 * 110.48578 * 203.38190 * 16 15 13 28 28 H 1.08998 * 110.60430 * 80.79077 * 16 15 13 29 29 H 1.09002 * 110.02957 * 264.32709 * 17 16 15 30 30 H 1.08996 * 110.03427 * 142.89930 * 17 16 15 31 31 H 0.96701 * 113.99540 * 62.83105 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7006 1.3463 0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0016 12 6 1.2164 -4.9165 -0.0022 13 6 2.2107 -6.0794 -0.0027 14 1 2.9327 -5.9649 -0.8112 15 6 2.9361 -6.1730 1.3626 16 6 3.3867 -7.6542 1.4093 17 6 2.2151 -8.4265 0.7685 18 6 1.4673 -7.4252 -0.1293 19 1 0.4373 -7.3162 0.2102 20 8 1.4913 -7.8719 -1.4864 21 1 -0.4850 0.8400 0.0004 22 1 2.9190 -3.6477 -0.0020 23 1 0.5894 -4.9736 -0.8920 24 1 0.5901 -4.9747 0.8879 25 1 3.7979 -5.5061 1.3887 26 1 2.2502 -5.9520 2.1804 27 1 3.5366 -7.9750 2.4402 28 1 4.2992 -7.7960 0.8302 29 1 1.5480 -8.8034 1.5438 30 1 2.5962 -9.2532 0.1691 31 1 1.0395 -8.7145 -1.6312 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084239066.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:45 Heat of formation + Delta-G solvation = -110.979019 kcal Electronic energy + Delta-G solvation = -14180.928562 eV Core-core repulsion = 11654.251469 eV Total energy + Delta-G solvation = -2526.677094 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.02238 -37.01908 -35.08895 -33.14829 -32.20838 -29.36083 -27.59312 -26.27635 -23.55538 -20.80118 -19.85461 -19.56087 -17.19117 -17.01025 -15.50516 -15.38015 -14.96218 -14.22004 -13.87350 -13.73494 -13.16303 -12.72294 -12.44173 -12.10926 -11.84457 -11.24275 -11.10713 -11.05843 -10.87755 -10.52889 -10.46699 -10.35528 -10.31488 -10.14193 -9.86902 -8.81694 -7.55528 -7.41527 -6.13960 -4.58984 3.15871 3.23750 3.28488 4.12562 4.24747 4.54654 4.62699 4.64518 4.92876 5.17287 5.37473 5.42093 5.54800 5.65969 5.68560 5.79197 5.88146 5.91742 6.04501 6.15265 6.24193 6.35789 6.64383 6.70047 7.47931 7.71263 7.99694 8.17300 8.39050 9.07273 9.61049 10.65525 10.84686 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058834 B = 0.006273 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.798985 B = 4462.287354 C = 4702.295084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.766 5.766 12 C 0.142 3.858 13 C -0.094 4.094 14 H 0.087 0.913 15 C -0.117 4.117 16 C -0.122 4.122 17 C -0.156 4.156 18 C 0.104 3.896 19 H 0.061 0.939 20 O -0.564 6.564 21 H 0.267 0.733 22 H 0.379 0.621 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -13.588 1.909 14.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.465 6.465 11 N -0.421 5.421 12 C 0.017 3.983 13 C -0.113 4.113 14 H 0.105 0.895 15 C -0.155 4.155 16 C -0.160 4.160 17 C -0.194 4.194 18 C 0.045 3.955 19 H 0.079 0.921 20 O -0.369 6.369 21 H 0.078 0.922 22 H 0.211 0.789 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.243 -12.929 1.833 14.071 hybrid contribution 0.569 0.201 0.103 0.612 sum 5.812 -12.728 1.937 14.125 Atomic orbital electron populations 1.70036 1.07070 1.27061 1.35678 1.25713 0.94600 1.00284 0.92639 0.86327 0.80486 0.81814 0.78167 1.18798 1.20183 1.20203 1.20931 0.93589 0.89447 1.54303 0.91422 1.18227 0.87205 0.82505 0.76289 1.90591 1.14153 1.86941 1.54864 1.46093 1.08478 1.04865 1.82694 1.20881 0.93444 0.83476 1.00494 1.22203 0.97994 0.92843 0.98268 0.89490 1.22546 1.00355 0.95762 0.96802 1.22302 0.97760 0.95615 1.00275 1.22894 0.98279 0.98666 0.99562 1.22495 0.98369 0.93360 0.81305 0.92055 1.86588 1.80194 1.42698 1.27401 0.92226 0.78943 0.93297 0.93488 0.90854 0.90936 0.91780 0.91611 0.91511 0.91193 0.78129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.63 11.83 55.55 0.66 -22.97 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.50 29.56 -169.99 -5.02 15.48 16 4 H -0.26 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.55 -15.81 9.54 -35.63 -0.34 -16.15 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.38 16 9 C 0.55 16.31 7.75 -12.99 -0.10 16.21 16 10 O -0.58 -19.51 15.02 5.20 0.08 -19.44 16 11 N -0.77 -17.80 5.44 -61.72 -0.34 -18.14 16 12 C 0.14 2.88 4.96 -4.04 -0.02 2.86 16 13 C -0.09 -1.45 2.62 -88.96 -0.23 -1.68 16 14 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 15 C -0.12 -1.55 6.19 -24.74 -0.15 -1.70 16 16 C -0.12 -1.31 6.83 -25.07 -0.17 -1.48 16 17 C -0.16 -1.63 6.61 -25.61 -0.17 -1.80 16 18 C 0.10 1.36 3.83 -25.61 -0.10 1.26 16 19 H 0.06 0.80 7.84 -51.93 -0.41 0.40 16 20 O -0.56 -7.44 13.22 -35.23 -0.47 -7.91 16 21 H 0.27 7.39 8.29 -40.82 -0.34 7.06 16 22 H 0.38 7.76 8.42 -40.82 -0.34 7.41 16 23 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.05 0.99 8.02 -51.93 -0.42 0.57 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.66 7.95 -51.93 -0.41 0.25 16 31 H 0.37 3.09 9.11 45.56 0.42 3.50 16 LS Contribution 264.44 15.07 3.99 3.99 Total: -1.00 -35.74 264.44 -6.14 -41.88 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -3.66 Total: 7.21 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.38 Total: -0.10 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.32 Total: -41.11 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.39 Total: -27.34 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -35.74 -6.14 -41.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084239066.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.098 kcal (2) G-P(sol) polarization free energy of solvation -35.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds