Wall clock time and date at job start Mon Mar 30 2020 02:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86797 * 120.00100 * 2 1 4 4 H 1.48498 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47240 * 300.00482 * 3 2 1 6 6 H 1.48504 * 109.47004 * 60.00056 * 3 2 1 7 7 C 1.40052 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99655 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00135 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99729 * 179.97438 * 9 7 2 12 12 C 1.46507 * 119.99944 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47152 * 180.02562 * 12 11 9 14 14 H 1.09001 * 110.53587 * 307.61149 * 13 12 11 15 15 C 1.54887 * 110.48548 * 70.22343 * 13 12 11 16 16 C 1.54893 * 102.74533 * 156.62347 * 15 13 12 17 17 C 1.54266 * 104.19500 * 322.05712 * 16 15 13 18 18 C 1.53872 * 106.60044 * 23.61099 * 17 16 15 19 19 H 1.09003 * 110.03622 * 240.71485 * 18 17 16 20 20 O 1.42898 * 110.03547 * 119.28222 * 18 17 16 21 21 H 0.97002 * 120.00277 * 359.97438 * 1 2 3 22 22 H 0.97002 * 120.00133 * 0.02562 * 11 9 7 23 23 H 1.09005 * 109.47023 * 60.00084 * 12 11 9 24 24 H 1.08994 * 109.46876 * 300.00501 * 12 11 9 25 25 H 1.09001 * 110.75744 * 274.93249 * 15 13 12 26 26 H 1.09000 * 110.75698 * 38.31067 * 15 13 12 27 27 H 1.09002 * 110.48578 * 203.38190 * 16 15 13 28 28 H 1.08998 * 110.60430 * 80.79077 * 16 15 13 29 29 H 1.09002 * 110.02957 * 264.32709 * 17 16 15 30 30 H 1.08996 * 110.03427 * 142.89930 * 17 16 15 31 31 H 0.96701 * 113.99540 * 62.83105 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7006 1.3463 0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0016 12 6 1.2164 -4.9165 -0.0022 13 6 2.2107 -6.0794 -0.0027 14 1 2.9327 -5.9649 -0.8112 15 6 2.9361 -6.1730 1.3626 16 6 3.3867 -7.6542 1.4093 17 6 2.2151 -8.4265 0.7685 18 6 1.4673 -7.4252 -0.1293 19 1 0.4373 -7.3162 0.2102 20 8 1.4913 -7.8719 -1.4864 21 1 -0.4850 0.8400 0.0004 22 1 2.9190 -3.6477 -0.0020 23 1 0.5894 -4.9736 -0.8920 24 1 0.5901 -4.9747 0.8879 25 1 3.7979 -5.5061 1.3887 26 1 2.2502 -5.9520 2.1804 27 1 3.5366 -7.9750 2.4402 28 1 4.2992 -7.7960 0.8302 29 1 1.5480 -8.8034 1.5438 30 1 2.5962 -9.2532 0.1691 31 1 1.0395 -8.7145 -1.6312 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084239066.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:44 Heat of formation + Delta-G solvation = -140.127237 kcal Electronic energy + Delta-G solvation = -14182.192524 eV Core-core repulsion = 11654.251469 eV Total energy + Delta-G solvation = -2527.941055 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.25488 -39.03530 -36.28221 -34.98766 -34.35174 -30.91318 -28.59180 -28.31810 -25.14401 -21.98317 -21.47506 -21.06882 -19.17884 -18.12256 -17.47501 -16.65890 -16.29499 -15.83266 -15.71670 -15.41307 -14.39527 -14.17070 -14.08782 -13.43140 -13.35072 -13.08187 -12.79398 -12.67648 -12.38909 -12.02927 -11.97606 -11.71739 -11.62264 -11.33340 -10.95504 -10.85515 -9.88920 -9.50051 -8.30259 -6.87133 1.40218 1.40683 1.59058 2.24750 2.45998 3.00543 3.38691 3.57770 3.60061 3.70263 3.99420 4.29936 4.38519 4.43528 4.51503 4.60604 4.77210 4.87016 4.94710 5.04715 5.16551 5.22457 5.31128 5.32480 5.44107 5.86368 6.21666 6.26145 6.85460 6.93320 7.53966 8.47791 8.66514 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058834 B = 0.006273 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.798985 B = 4462.287354 C = 4702.295084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.002 2.998 4 H -0.246 1.246 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.534 3.466 10 O -0.636 6.636 11 N -0.752 5.752 12 C 0.146 3.854 13 C -0.089 4.089 14 H 0.081 0.919 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.147 4.147 18 C 0.103 3.897 19 H 0.056 0.944 20 O -0.583 6.583 21 H 0.275 0.725 22 H 0.395 0.605 23 H 0.021 0.979 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.159 -14.027 2.363 16.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.169 1.169 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.610 4.610 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.523 6.523 11 N -0.406 5.406 12 C 0.021 3.979 13 C -0.108 4.108 14 H 0.100 0.900 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.184 4.184 18 C 0.044 3.956 19 H 0.074 0.926 20 O -0.392 6.392 21 H 0.085 0.915 22 H 0.229 0.771 23 H 0.039 0.961 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 7.439 -13.436 2.285 15.527 hybrid contribution -0.144 0.273 -0.072 0.317 sum 7.295 -13.163 2.214 15.211 Atomic orbital electron populations 1.70203 1.09668 1.28953 1.36556 1.27040 0.95553 1.05138 0.91121 0.84917 0.79314 0.75105 0.78575 1.16883 1.19338 1.19188 1.21477 0.94782 0.90018 1.54687 0.89310 1.18696 0.86870 0.84497 0.76086 1.90542 1.16341 1.88067 1.57379 1.45778 1.09232 1.04621 1.81016 1.20940 0.94333 0.84095 0.98490 1.22122 0.96880 0.92101 0.99675 0.90047 1.22536 0.99929 0.98149 0.94824 1.22293 0.98029 0.93242 1.01711 1.22832 0.98053 0.98105 0.99453 1.22445 0.98221 0.92884 0.82068 0.92628 1.86527 1.80745 1.44436 1.27459 0.91524 0.77146 0.96090 0.94733 0.90694 0.91764 0.89857 0.90869 0.89956 0.89521 0.75646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.82 11.83 21.84 0.26 -51.57 16 2 C 0.03 1.50 5.50 85.31 0.47 1.97 16 3 Si 1.00 41.67 29.56 68.60 2.03 43.70 16 4 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.57 -33.47 9.54 24.83 0.24 -33.24 16 8 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 9 C 0.53 32.46 7.75 86.36 0.67 33.13 16 10 O -0.64 -44.58 15.02 -4.30 -0.06 -44.65 16 11 N -0.75 -35.81 5.44 -467.39 -2.54 -38.35 16 12 C 0.15 6.14 4.96 86.38 0.43 6.56 16 13 C -0.09 -2.70 2.62 -9.72 -0.03 -2.73 16 14 H 0.08 2.58 8.08 -2.39 -0.02 2.56 16 15 C -0.12 -2.92 6.19 31.89 0.20 -2.73 16 16 C -0.12 -2.13 6.83 31.67 0.22 -1.91 16 17 C -0.15 -2.62 6.61 31.32 0.21 -2.41 16 18 C 0.10 2.58 3.83 31.32 0.12 2.70 16 19 H 0.06 1.44 7.84 -2.39 -0.02 1.42 16 20 O -0.58 -14.64 13.22 -148.98 -1.97 -16.61 16 21 H 0.27 15.53 8.29 -92.71 -0.77 14.77 16 22 H 0.39 16.18 8.42 -92.71 -0.78 15.39 16 23 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.03 1.52 8.02 -2.39 -0.02 1.50 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.06 1.72 7.96 -2.39 -0.02 1.70 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.30 7.95 -2.39 -0.02 1.28 16 31 H 0.39 5.82 9.11 -74.06 -0.67 5.15 16 Total: -1.00 -79.83 264.44 -0.09 -79.92 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: -0.32 Total: 26.22 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 2.52 Total: 1.34 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -2.29 Total: -89.92 kcal Atomic # 8 Polarization: -59.23 SS G_CDS: -2.03 Total: -61.26 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -79.83 -0.09 -79.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084239066.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.211 kcal (2) G-P(sol) polarization free energy of solvation -79.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds