Wall clock time and date at job start Mon Mar 30 2020 02:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00039 * 2 1 4 4 H 1.48508 * 109.46976 * 270.00024 * 3 2 1 5 5 H 1.48496 * 109.47236 * 29.99508 * 3 2 1 6 6 H 1.48494 * 109.47189 * 150.00450 * 3 2 1 7 7 C 1.38810 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00139 * 0.02562 * 7 2 1 9 9 N 1.36945 * 119.99697 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99817 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47165 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.66811 * 308.23084 * 11 10 9 13 13 C 1.54891 * 110.75763 * 71.66479 * 11 10 9 14 14 C 1.54267 * 104.19324 * 156.25900 * 13 11 10 15 15 C 1.53876 * 106.59870 * 336.39035 * 14 13 11 16 16 C 1.54261 * 106.59990 * 0.02562 * 15 14 13 17 17 H 1.08999 * 110.48469 * 264.93049 * 16 15 14 18 18 C 1.50702 * 110.48963 * 142.41883 * 16 15 14 19 19 O 1.20822 * 119.99976 * 241.45711 * 18 16 15 20 20 O 1.34233 * 119.99633 * 61.44860 * 18 16 15 21 21 H 0.97010 * 120.00340 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00021 * 0.02562 * 9 7 2 23 23 H 1.09000 * 109.47283 * 59.99713 * 10 9 7 24 24 H 1.09005 * 109.46680 * 299.99780 * 10 9 7 25 25 H 1.09004 * 110.48613 * 37.58272 * 13 11 10 26 26 H 1.08994 * 110.48745 * 274.93690 * 13 11 10 27 27 H 1.08995 * 110.03032 * 217.10762 * 14 13 11 28 28 H 1.08998 * 110.03405 * 95.67701 * 14 13 11 29 29 H 1.08998 * 110.02768 * 119.28860 * 15 14 13 30 30 H 1.08994 * 110.03051 * 240.71540 * 15 14 13 31 31 H 0.96696 * 116.99652 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.6999 7 6 2.0101 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1913 0.0000 12 1 5.8792 -1.5006 -0.8011 13 6 6.0728 -1.6431 1.3748 14 6 7.5752 -1.9873 1.4394 15 6 7.7957 -3.1741 0.4851 16 6 6.4198 -3.5092 -0.1266 17 1 5.9354 -4.3062 0.4375 18 6 6.5677 -3.9037 -1.5736 19 8 6.0298 -3.2503 -2.4359 20 8 7.2973 -4.9808 -1.9043 21 1 -0.4851 0.8401 0.0004 22 1 3.8646 -0.3621 -0.0004 23 1 3.8484 -3.0427 -0.8897 24 1 3.8491 -3.0422 0.8903 25 1 5.5328 -2.1388 2.1816 26 1 5.9262 -0.5641 1.4230 27 1 7.8502 -2.2694 2.4557 28 1 8.1684 -1.1323 1.1153 29 1 8.4959 -2.8949 -0.3022 30 1 8.1777 -4.0320 1.0383 31 1 7.3635 -5.1941 -2.8451 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084307421.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:31 Heat of formation + Delta-G solvation = -95.470136 kcal Electronic energy + Delta-G solvation = -14431.967886 eV Core-core repulsion = 11905.963308 eV Total energy + Delta-G solvation = -2526.004578 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.48141 -37.95495 -35.99329 -34.48809 -31.50744 -29.65701 -28.98001 -24.88710 -22.97594 -21.66828 -20.28806 -19.72062 -17.88395 -17.50842 -16.92516 -15.62179 -14.84391 -14.54261 -14.29178 -13.90161 -13.35129 -13.03724 -12.58549 -12.37347 -11.96789 -11.66001 -11.45320 -11.14508 -10.91698 -10.69419 -10.60562 -10.44834 -10.36825 -10.23346 -10.03731 -9.53161 -8.82720 -7.15479 -5.70892 -3.05416 2.29316 3.06464 3.41759 3.45585 3.49419 4.40837 4.56977 4.65026 4.81317 5.31322 5.36947 5.38593 5.44281 5.58191 5.61534 5.70948 5.77686 5.88744 5.94198 6.13919 6.16744 6.36639 6.42868 6.50726 6.78071 6.83896 7.95599 8.05900 8.48294 9.27916 10.00451 10.21090 11.47790 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037897 B = 0.008264 C = 0.007435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.665112 B = 3387.427243 C = 3765.153444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.089 0.911 9 N -0.753 5.753 10 C 0.166 3.834 11 C -0.087 4.087 12 H 0.088 0.912 13 C -0.117 4.117 14 C -0.125 4.125 15 C -0.108 4.108 16 C -0.081 4.081 17 H 0.115 0.885 18 C 0.480 3.520 19 O -0.501 6.501 20 O -0.521 6.521 21 H 0.259 0.741 22 H 0.361 0.639 23 H 0.028 0.972 24 H 0.027 0.973 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.186 -7.618 1.158 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.039 3.961 11 C -0.105 4.105 12 H 0.106 0.894 13 C -0.154 4.154 14 C -0.163 4.163 15 C -0.146 4.146 16 C -0.100 4.100 17 H 0.133 0.867 18 C 0.322 3.678 19 O -0.387 6.387 20 O -0.333 6.333 21 H 0.069 0.931 22 H 0.193 0.807 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 17.766 -7.417 1.341 19.298 hybrid contribution 0.520 1.021 -0.747 1.368 sum 18.286 -6.396 0.594 19.381 Atomic orbital electron populations 1.69705 1.05088 1.25726 1.57940 1.24659 0.95242 0.97180 1.02219 0.86534 0.79180 0.84969 0.77809 1.21096 1.21773 1.20308 1.19073 0.80672 0.94732 1.42562 0.89280 1.42633 1.03952 1.02140 1.91089 1.20623 0.87478 0.89536 0.98482 1.22331 0.96072 0.93901 0.98239 0.89380 1.22406 0.94296 1.01745 0.96974 1.22169 0.97426 0.97492 0.99197 1.22055 0.94549 0.99114 0.98851 1.21937 0.99031 1.00510 0.88543 0.86738 1.23516 0.74404 0.77067 0.92820 1.90777 1.44293 1.52148 1.51476 1.84549 1.67733 1.46631 1.34430 0.93137 0.80660 0.95376 0.95516 0.90745 0.91010 0.91457 0.91724 0.91613 0.90646 0.73640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.22 13.97 55.49 0.78 -29.44 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 22.82 27.74 -169.99 -4.71 18.10 16 4 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 6 H -0.28 -6.65 6.52 56.52 0.37 -6.29 16 7 C -0.24 -7.10 10.47 -15.06 -0.16 -7.25 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.75 -18.79 5.33 -59.90 -0.32 -19.11 16 10 C 0.17 3.38 5.69 -4.04 -0.02 3.36 16 11 C -0.09 -1.39 1.92 -88.64 -0.17 -1.56 16 12 H 0.09 1.56 7.53 -51.93 -0.39 1.17 16 13 C -0.12 -1.62 6.20 -25.07 -0.16 -1.78 16 14 C -0.13 -1.33 6.80 -25.61 -0.17 -1.50 16 15 C -0.11 -1.10 6.34 -25.61 -0.16 -1.27 16 16 C -0.08 -1.03 2.80 -90.13 -0.25 -1.28 16 17 H 0.11 1.32 8.05 -51.93 -0.42 0.90 16 18 C 0.48 6.62 7.49 36.01 0.27 6.89 16 19 O -0.50 -8.92 16.37 -18.75 -0.31 -9.23 16 20 O -0.52 -5.38 13.40 -39.27 -0.53 -5.91 16 21 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 22 H 0.36 8.76 5.53 -40.82 -0.23 8.54 16 23 H 0.03 0.62 7.98 -51.93 -0.41 0.21 16 24 H 0.03 0.53 7.99 -51.93 -0.41 0.12 16 25 H 0.07 1.03 7.93 -51.93 -0.41 0.62 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.66 7.83 -51.93 -0.41 0.25 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.41 2.55 9.10 45.56 0.41 2.97 16 LS Contribution 261.64 15.07 3.94 3.94 Total: -1.00 -34.78 261.64 -5.62 -40.40 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -3.55 Total: 5.66 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.92 Total: -4.41 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.46 Total: -48.55 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.83 Total: -15.13 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.10 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.78 -5.62 -40.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084307421.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.074 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds