Wall clock time and date at job start Mon Mar 30 2020 02:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00039 * 2 1 4 4 H 1.48508 * 109.46976 * 270.00024 * 3 2 1 5 5 H 1.48496 * 109.47236 * 29.99508 * 3 2 1 6 6 H 1.48494 * 109.47189 * 150.00450 * 3 2 1 7 7 C 1.38810 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00139 * 0.02562 * 7 2 1 9 9 N 1.36945 * 119.99697 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99817 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47165 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.66811 * 308.23084 * 11 10 9 13 13 C 1.54891 * 110.75763 * 71.66479 * 11 10 9 14 14 C 1.54267 * 104.19324 * 156.25900 * 13 11 10 15 15 C 1.53876 * 106.59870 * 336.39035 * 14 13 11 16 16 C 1.54261 * 106.59990 * 0.02562 * 15 14 13 17 17 H 1.08999 * 110.48469 * 264.93049 * 16 15 14 18 18 C 1.50702 * 110.48963 * 142.41883 * 16 15 14 19 19 O 1.20822 * 119.99976 * 241.45711 * 18 16 15 20 20 O 1.34233 * 119.99633 * 61.44860 * 18 16 15 21 21 H 0.97010 * 120.00340 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00021 * 0.02562 * 9 7 2 23 23 H 1.09000 * 109.47283 * 59.99713 * 10 9 7 24 24 H 1.09005 * 109.46680 * 299.99780 * 10 9 7 25 25 H 1.09004 * 110.48613 * 37.58272 * 13 11 10 26 26 H 1.08994 * 110.48745 * 274.93690 * 13 11 10 27 27 H 1.08995 * 110.03032 * 217.10762 * 14 13 11 28 28 H 1.08998 * 110.03405 * 95.67701 * 14 13 11 29 29 H 1.08998 * 110.02768 * 119.28860 * 15 14 13 30 30 H 1.08994 * 110.03051 * 240.71540 * 15 14 13 31 31 H 0.96696 * 116.99652 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.6999 7 6 2.0101 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1913 0.0000 12 1 5.8792 -1.5006 -0.8011 13 6 6.0728 -1.6431 1.3748 14 6 7.5752 -1.9873 1.4394 15 6 7.7957 -3.1741 0.4851 16 6 6.4198 -3.5092 -0.1266 17 1 5.9354 -4.3062 0.4375 18 6 6.5677 -3.9037 -1.5736 19 8 6.0298 -3.2503 -2.4359 20 8 7.2973 -4.9808 -1.9043 21 1 -0.4851 0.8401 0.0004 22 1 3.8646 -0.3621 -0.0004 23 1 3.8484 -3.0427 -0.8897 24 1 3.8491 -3.0422 0.8903 25 1 5.5328 -2.1388 2.1816 26 1 5.9262 -0.5641 1.4230 27 1 7.8502 -2.2694 2.4557 28 1 8.1684 -1.1323 1.1153 29 1 8.4959 -2.8949 -0.3022 30 1 8.1777 -4.0320 1.0383 31 1 7.3635 -5.1941 -2.8451 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084307421.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:31 Heat of formation + Delta-G solvation = -121.087273 kcal Electronic energy + Delta-G solvation = -14433.078729 eV Core-core repulsion = 11905.963308 eV Total energy + Delta-G solvation = -2527.115420 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55941 -39.07589 -37.03159 -36.38224 -33.59485 -30.77792 -30.40347 -26.49590 -24.39283 -23.30897 -21.26028 -20.99348 -19.63014 -18.86663 -18.00506 -16.75823 -16.59454 -16.06326 -15.45802 -15.31218 -14.98640 -14.57632 -14.06949 -13.83429 -13.46982 -13.00882 -12.85044 -12.51454 -12.18898 -12.11662 -11.99863 -11.82276 -11.72800 -11.65971 -11.54349 -11.17460 -10.98817 -9.32023 -8.05241 -5.38725 1.23258 1.34783 1.39639 1.46643 2.13566 2.46489 3.25056 3.28843 3.54176 3.86456 3.91590 4.30970 4.42417 4.45429 4.51168 4.56400 4.64650 4.75234 4.93292 5.03646 5.13345 5.24597 5.27213 5.40270 5.50407 5.63948 5.72007 6.18802 7.02343 7.05116 7.81047 8.01510 9.16456 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037897 B = 0.008264 C = 0.007435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.665112 B = 3387.427243 C = 3765.153444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.956 3.044 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.248 1.248 7 C -0.238 4.238 8 H 0.054 0.946 9 N -0.755 5.755 10 C 0.164 3.836 11 C -0.084 4.084 12 H 0.069 0.931 13 C -0.117 4.117 14 C -0.117 4.117 15 C -0.099 4.099 16 C -0.080 4.080 17 H 0.130 0.870 18 C 0.486 3.514 19 O -0.551 6.551 20 O -0.507 6.507 21 H 0.259 0.741 22 H 0.366 0.634 23 H 0.007 0.993 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.216 -7.680 2.055 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.783 3.217 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.172 1.172 7 C -0.369 4.369 8 H 0.072 0.928 9 N -0.400 5.400 10 C 0.038 3.962 11 C -0.103 4.103 12 H 0.088 0.912 13 C -0.154 4.154 14 C -0.154 4.154 15 C -0.137 4.137 16 C -0.099 4.099 17 H 0.148 0.852 18 C 0.330 3.670 19 O -0.441 6.441 20 O -0.320 6.320 21 H 0.068 0.932 22 H 0.199 0.801 23 H 0.025 0.975 24 H 0.052 0.948 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 20.862 -7.534 2.240 22.293 hybrid contribution -0.457 0.881 -1.071 1.460 sum 20.405 -6.653 1.169 21.494 Atomic orbital electron populations 1.69887 1.07121 1.26784 1.59629 1.25534 0.96204 1.01364 1.02468 0.85392 0.78891 0.79417 0.78044 1.20853 1.21618 1.17207 1.19058 0.82758 0.93539 1.41554 0.92797 1.42641 1.02447 1.04085 1.90878 1.20767 0.90396 0.87511 0.97539 1.22179 0.93041 0.95870 0.99213 0.91229 1.22398 0.96967 1.00842 0.95242 1.22139 0.94599 0.97947 1.00733 1.22069 0.92629 1.00018 0.98958 1.21964 1.00357 0.99114 0.88488 0.85180 1.23694 0.73548 0.76945 0.92820 1.90771 1.46523 1.53953 1.52862 1.84494 1.66357 1.44867 1.36297 0.93232 0.80094 0.97527 0.94801 0.90771 0.92227 0.89151 0.91041 0.91168 0.87881 0.71416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.13 13.97 21.65 0.30 -64.83 16 2 C -0.06 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.96 47.19 27.74 68.60 1.90 49.09 16 4 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.25 -10.92 6.52 99.48 0.65 -10.27 16 7 C -0.24 -14.40 10.47 84.03 0.88 -13.52 16 8 H 0.05 3.56 8.06 -2.91 -0.02 3.53 16 9 N -0.75 -37.84 5.33 -343.44 -1.83 -39.67 16 10 C 0.16 6.72 5.69 86.38 0.49 7.21 16 11 C -0.08 -2.60 1.92 -9.51 -0.02 -2.62 16 12 H 0.07 2.43 7.53 -2.39 -0.02 2.41 16 13 C -0.12 -2.98 6.20 31.67 0.20 -2.78 16 14 C -0.12 -2.02 6.80 31.32 0.21 -1.80 16 15 C -0.10 -1.62 6.34 31.32 0.20 -1.43 16 16 C -0.08 -1.84 2.80 -10.47 -0.03 -1.87 16 17 H 0.13 2.62 8.05 -2.39 -0.02 2.60 16 18 C 0.49 12.60 7.49 71.24 0.53 13.14 16 19 O -0.55 -19.55 16.37 21.97 0.36 -19.19 16 20 O -0.51 -9.08 13.40 -51.45 -0.69 -9.77 16 21 H 0.26 16.22 8.31 -92.70 -0.77 15.45 16 22 H 0.37 17.43 5.53 -92.71 -0.51 16.92 16 23 H 0.01 0.30 7.98 -2.39 -0.02 0.28 16 24 H 0.03 1.34 7.99 -2.38 -0.02 1.32 16 25 H 0.07 1.89 7.93 -2.38 -0.02 1.87 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.12 7.83 -2.39 -0.02 1.10 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.42 4.29 9.10 -74.06 -0.67 3.61 16 Total: -1.00 -76.98 261.64 2.87 -74.11 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.11 Total: 17.41 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 2.93 Total: -7.16 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -1.53 Total: -104.49 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.33 Total: -28.96 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.90 Total: 49.09 kcal Total: -76.98 2.87 -74.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084307421.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.975 kcal (2) G-P(sol) polarization free energy of solvation -76.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds