Wall clock time and date at job start Mon Mar 30 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86791 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47336 * 269.99825 * 3 2 1 5 5 H 1.48504 * 109.47653 * 30.00029 * 3 2 1 6 6 H 1.48497 * 109.47356 * 150.00019 * 3 2 1 7 7 C 1.38816 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99550 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99965 * 359.72598 * 7 2 1 10 10 C 1.46494 * 119.99791 * 180.27080 * 9 7 2 11 11 C 1.53005 * 109.47064 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.01468 * 54.14583 * 11 10 9 13 13 C 1.54266 * 110.02813 * 292.70149 * 11 10 9 14 14 C 1.54897 * 104.19490 * 217.10424 * 13 11 10 15 15 C 1.54892 * 102.74637 * 37.94736 * 14 13 11 16 16 C 1.53876 * 110.03221 * 175.53804 * 11 10 9 17 17 H 1.08995 * 110.03250 * 238.61856 * 16 11 10 18 18 C 1.50703 * 110.03332 * 0.02562 * 16 11 10 19 19 O 1.20821 * 120.00290 * 86.59777 * 18 16 11 20 20 O 1.34231 * 119.99791 * 266.60276 * 18 16 11 21 21 H 0.97003 * 119.99840 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00029 * 0.27736 * 9 7 2 23 23 H 1.08993 * 109.47599 * 300.00169 * 10 9 7 24 24 H 1.08999 * 109.47041 * 60.00240 * 10 9 7 25 25 H 1.08997 * 110.49246 * 335.78316 * 13 11 10 26 26 H 1.09003 * 110.48527 * 98.42807 * 13 11 10 27 27 H 1.09002 * 110.75679 * 279.63417 * 14 13 11 28 28 H 1.08996 * 110.91131 * 156.33626 * 14 13 11 29 29 H 1.08998 * 110.48535 * 203.37928 * 15 14 13 30 30 H 1.08998 * 110.59944 * 80.78729 * 15 14 13 31 31 H 0.96705 * 117.00089 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0067 10 6 2.0578 -3.6568 0.0133 11 6 1.0635 -4.8197 0.0188 12 1 0.3654 -4.7175 -0.8121 13 6 0.2946 -4.8511 1.3558 14 6 0.1295 -6.3601 1.6637 15 6 1.4788 -6.9552 1.1897 16 6 1.8165 -6.1575 -0.0868 17 1 1.4838 -6.7046 -0.9688 18 6 3.3011 -5.9098 -0.1624 19 8 3.9472 -5.7971 0.8523 20 8 3.9056 -5.8142 -1.3570 21 1 -0.4850 0.8401 0.0004 22 1 0.3554 -2.3880 0.0067 23 1 2.6845 -3.7192 -0.8763 24 1 2.6845 -3.7099 0.9036 25 1 0.8729 -4.3628 2.1401 26 1 -0.6800 -4.3752 1.2466 27 1 -0.6995 -6.7819 1.0954 28 1 -0.0120 -6.5261 2.7316 29 1 1.3684 -8.0148 0.9593 30 1 2.2495 -6.8084 1.9463 31 1 4.8593 -5.6544 -1.3550 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084307424.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:33 Heat of formation + Delta-G solvation = -98.446413 kcal Electronic energy + Delta-G solvation = -14587.960278 eV Core-core repulsion = 12061.826639 eV Total energy + Delta-G solvation = -2526.133639 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53005 -37.72726 -35.81074 -34.30728 -31.40128 -29.53005 -28.50088 -24.64907 -22.96223 -22.21024 -20.39220 -19.15851 -17.82113 -17.13401 -16.39154 -15.69941 -14.95957 -14.51180 -14.26384 -13.64801 -13.06658 -12.97496 -12.82117 -11.94115 -11.61814 -11.45621 -11.19316 -10.86643 -10.83265 -10.79005 -10.53670 -10.49944 -10.35141 -10.09462 -9.87754 -9.66723 -8.84844 -6.90086 -5.74620 -3.02976 2.44258 3.24221 3.45333 3.50308 3.52346 4.55245 4.62782 4.73277 5.02022 5.43011 5.48318 5.52596 5.58725 5.66322 5.72829 5.82918 5.90560 6.02674 6.22081 6.25353 6.33524 6.49782 6.64316 6.68145 6.74166 6.90229 7.72246 8.11592 8.44280 9.55611 10.12362 10.48435 11.48310 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037147 B = 0.008350 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.572952 B = 3352.465666 C = 3852.738305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.147 3.853 11 C -0.087 4.087 12 H 0.086 0.914 13 C -0.112 4.112 14 C -0.123 4.123 15 C -0.115 4.115 16 C -0.080 4.080 17 H 0.101 0.899 18 C 0.492 3.508 19 O -0.516 6.516 20 O -0.517 6.517 21 H 0.255 0.745 22 H 0.385 0.615 23 H 0.019 0.981 24 H 0.027 0.973 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 -14.486 -0.250 14.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.019 3.981 11 C -0.106 4.106 12 H 0.104 0.896 13 C -0.150 4.150 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.100 4.100 17 H 0.119 0.881 18 C 0.335 3.665 19 O -0.404 6.404 20 O -0.329 6.329 21 H 0.065 0.935 22 H 0.219 0.781 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.053 -14.399 0.036 14.544 hybrid contribution 0.866 1.122 -0.125 1.423 sum 2.919 -13.277 -0.089 13.594 Atomic orbital electron populations 1.69662 1.05066 1.25614 1.57894 1.24731 0.95553 0.97648 1.03061 0.86178 0.78676 0.83786 0.77509 1.21713 1.21721 1.20786 1.19227 0.91013 0.84173 1.42533 0.91340 1.42273 1.05795 0.99703 1.89438 1.21015 0.93239 0.85813 0.98031 1.21943 0.97378 0.91801 0.99432 0.89555 1.22386 1.00699 0.95212 0.96696 1.22502 0.96282 0.96286 1.00958 1.22449 0.98944 0.98147 0.95744 1.21747 0.87283 0.99560 1.01413 0.88109 1.23318 0.91329 0.71356 0.80520 1.90682 1.66673 1.46519 1.36498 1.84579 1.29345 1.84066 1.34879 0.93535 0.78144 0.96308 0.95540 0.90729 0.90911 0.91465 0.91273 0.91324 0.89655 0.73635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.09 5.44 -59.91 -0.33 -19.42 16 10 C 0.15 3.15 4.37 -4.04 -0.02 3.14 16 11 C -0.09 -1.45 2.97 -89.50 -0.27 -1.71 16 12 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 13 C -0.11 -1.77 6.06 -25.07 -0.15 -1.92 16 14 C -0.12 -1.48 6.91 -24.73 -0.17 -1.65 16 15 C -0.12 -1.42 6.31 -25.07 -0.16 -1.58 16 16 C -0.08 -1.11 3.40 -90.65 -0.31 -1.42 16 17 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 18 C 0.49 7.62 5.15 36.01 0.19 7.80 16 19 O -0.52 -9.34 15.77 -18.75 -0.30 -9.64 16 20 O -0.52 -6.87 12.96 -39.26 -0.51 -7.38 16 21 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.38 10.39 7.53 -40.82 -0.31 10.08 16 23 H 0.02 0.42 6.91 -51.93 -0.36 0.06 16 24 H 0.03 0.62 7.10 -51.93 -0.37 0.25 16 25 H 0.07 1.33 7.77 -51.93 -0.40 0.93 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.19 6.88 -51.93 -0.36 0.83 16 31 H 0.41 3.72 9.10 45.56 0.41 4.14 16 LS Contribution 259.04 15.07 3.90 3.90 Total: -1.00 -33.29 259.04 -6.12 -39.42 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -3.46 Total: 8.01 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.13 Total: -4.93 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.40 Total: -47.29 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.80 Total: -17.02 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.29 -6.12 -39.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084307424.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.030 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds