Wall clock time and date at job start Mon Mar 30 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86791 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47336 * 269.99825 * 3 2 1 5 5 H 1.48504 * 109.47653 * 30.00029 * 3 2 1 6 6 H 1.48497 * 109.47356 * 150.00019 * 3 2 1 7 7 C 1.38816 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99550 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99965 * 359.72598 * 7 2 1 10 10 C 1.46494 * 119.99791 * 180.27080 * 9 7 2 11 11 C 1.53005 * 109.47064 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.01468 * 54.14583 * 11 10 9 13 13 C 1.54266 * 110.02813 * 292.70149 * 11 10 9 14 14 C 1.54897 * 104.19490 * 217.10424 * 13 11 10 15 15 C 1.54892 * 102.74637 * 37.94736 * 14 13 11 16 16 C 1.53876 * 110.03221 * 175.53804 * 11 10 9 17 17 H 1.08995 * 110.03250 * 238.61856 * 16 11 10 18 18 C 1.50703 * 110.03332 * 0.02562 * 16 11 10 19 19 O 1.20821 * 120.00290 * 86.59777 * 18 16 11 20 20 O 1.34231 * 119.99791 * 266.60276 * 18 16 11 21 21 H 0.97003 * 119.99840 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00029 * 0.27736 * 9 7 2 23 23 H 1.08993 * 109.47599 * 300.00169 * 10 9 7 24 24 H 1.08999 * 109.47041 * 60.00240 * 10 9 7 25 25 H 1.08997 * 110.49246 * 335.78316 * 13 11 10 26 26 H 1.09003 * 110.48527 * 98.42807 * 13 11 10 27 27 H 1.09002 * 110.75679 * 279.63417 * 14 13 11 28 28 H 1.08996 * 110.91131 * 156.33626 * 14 13 11 29 29 H 1.08998 * 110.48535 * 203.37928 * 15 14 13 30 30 H 1.08998 * 110.59944 * 80.78729 * 15 14 13 31 31 H 0.96705 * 117.00089 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0067 10 6 2.0578 -3.6568 0.0133 11 6 1.0635 -4.8197 0.0188 12 1 0.3654 -4.7175 -0.8121 13 6 0.2946 -4.8511 1.3558 14 6 0.1295 -6.3601 1.6637 15 6 1.4788 -6.9552 1.1897 16 6 1.8165 -6.1575 -0.0868 17 1 1.4838 -6.7046 -0.9688 18 6 3.3011 -5.9098 -0.1624 19 8 3.9472 -5.7971 0.8523 20 8 3.9056 -5.8142 -1.3570 21 1 -0.4850 0.8401 0.0004 22 1 0.3554 -2.3880 0.0067 23 1 2.6845 -3.7192 -0.8763 24 1 2.6845 -3.7099 0.9036 25 1 0.8729 -4.3628 2.1401 26 1 -0.6800 -4.3752 1.2466 27 1 -0.6995 -6.7819 1.0954 28 1 -0.0120 -6.5261 2.7316 29 1 1.3684 -8.0148 0.9593 30 1 2.2495 -6.8084 1.9463 31 1 4.8593 -5.6544 -1.3550 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084307424.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:33 Heat of formation + Delta-G solvation = -122.116000 kcal Electronic energy + Delta-G solvation = -14588.986668 eV Core-core repulsion = 12061.826639 eV Total energy + Delta-G solvation = -2527.160029 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.74764 -38.96586 -37.04119 -36.21820 -33.36006 -30.77041 -30.04722 -26.47056 -24.42531 -23.83493 -21.53974 -20.44728 -19.24121 -18.96746 -17.68013 -17.08767 -16.44547 -16.12777 -15.58259 -15.29451 -14.95524 -14.62147 -14.07573 -13.42181 -13.16638 -12.82856 -12.75951 -12.57579 -12.27991 -12.17601 -11.93204 -11.85611 -11.79161 -11.65916 -11.50036 -11.26805 -10.96742 -9.06497 -8.00004 -5.29650 1.22462 1.43847 1.45933 1.54606 2.17858 2.51679 3.32241 3.46670 3.52807 3.80027 4.16611 4.33895 4.40357 4.48651 4.51393 4.53198 4.63245 4.72787 4.93345 4.97196 5.09875 5.22011 5.30537 5.34308 5.42188 5.50053 5.65600 6.22119 7.01885 7.28736 8.01363 8.28490 9.23082 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037147 B = 0.008350 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.572952 B = 3352.465666 C = 3852.738305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.975 3.025 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.738 5.738 10 C 0.151 3.849 11 C -0.083 4.083 12 H 0.093 0.907 13 C -0.116 4.116 14 C -0.110 4.110 15 C -0.111 4.111 16 C -0.077 4.077 17 H 0.134 0.866 18 C 0.489 3.511 19 O -0.549 6.549 20 O -0.514 6.514 21 H 0.254 0.746 22 H 0.378 0.622 23 H 0.016 0.984 24 H 0.006 0.994 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 -15.678 -0.791 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.381 5.381 10 C 0.025 3.975 11 C -0.102 4.102 12 H 0.111 0.889 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.148 4.148 16 C -0.097 4.097 17 H 0.152 0.848 18 C 0.333 3.667 19 O -0.440 6.440 20 O -0.327 6.327 21 H 0.063 0.937 22 H 0.211 0.789 23 H 0.034 0.966 24 H 0.023 0.977 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 2.058 -15.618 -0.523 15.761 hybrid contribution 0.928 1.482 0.018 1.749 sum 2.986 -14.135 -0.505 14.456 Atomic orbital electron populations 1.69805 1.06434 1.26294 1.58878 1.25568 0.96518 1.01011 1.03168 0.85131 0.77582 0.79316 0.77660 1.20947 1.21606 1.19935 1.19559 0.91213 0.85602 1.42213 0.91561 1.42431 1.05648 1.00708 1.89327 1.21055 0.93969 0.85940 0.96568 1.21892 0.96646 0.91418 1.00206 0.88902 1.22350 0.99547 0.98159 0.95278 1.22478 0.97141 0.92885 1.02233 1.22459 0.98154 0.99931 0.94272 1.21856 0.85821 0.98158 1.03853 0.84766 1.23698 0.92060 0.70501 0.80416 1.90674 1.67603 1.48029 1.37672 1.84541 1.30942 1.83462 1.33779 0.93731 0.78927 0.96636 0.97661 0.93863 0.91548 0.88836 0.90150 0.87779 0.91739 0.71702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.64 13.06 21.65 0.28 -59.36 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -39.47 5.44 -343.46 -1.87 -41.34 16 10 C 0.15 6.60 4.37 86.38 0.38 6.98 16 11 C -0.08 -2.70 2.97 -10.07 -0.03 -2.73 16 12 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 13 C -0.12 -3.60 6.06 31.67 0.19 -3.41 16 14 C -0.11 -2.37 6.91 31.89 0.22 -2.15 16 15 C -0.11 -2.42 6.31 31.67 0.20 -2.22 16 16 C -0.08 -1.97 3.40 -10.81 -0.04 -2.00 16 17 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 18 C 0.49 14.57 5.15 71.24 0.37 14.94 16 19 O -0.55 -19.85 15.77 21.98 0.35 -19.50 16 20 O -0.51 -12.83 12.96 -51.42 -0.67 -13.50 16 21 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 22 H 0.38 20.89 7.53 -92.71 -0.70 20.19 16 23 H 0.02 0.70 6.91 -2.39 -0.02 0.68 16 24 H 0.01 0.26 7.10 -2.39 -0.02 0.25 16 25 H 0.04 1.59 7.77 -2.39 -0.02 1.57 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 1.71 6.88 -2.39 -0.02 1.69 16 31 H 0.42 7.20 9.10 -74.05 -0.67 6.53 16 Total: -1.00 -71.92 259.04 2.49 -69.44 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.23 Total: 23.33 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 2.60 Total: -8.37 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -1.59 Total: -100.70 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.32 Total: -33.01 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -71.92 2.49 -69.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084307424.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.679 kcal (2) G-P(sol) polarization free energy of solvation -71.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds