Wall clock time and date at job start Mon Mar 30 2020 02:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.47449 * 110.99925 * 69.87541 * 10 9 7 12 12 C 1.54311 * 107.23220 * 123.25698 * 11 10 9 13 13 C 1.55140 * 103.02352 * 22.28584 * 12 11 10 14 14 H 1.08997 * 110.99296 * 82.46783 * 13 12 11 15 15 C 1.52996 * 110.99237 * 206.25464 * 13 12 11 16 16 C 1.50694 * 109.47326 * 293.54427 * 15 13 12 17 17 O 1.20828 * 119.99902 * 0.02562 * 16 15 13 18 18 O 1.34229 * 120.00050 * 179.97438 * 16 15 13 19 19 C 1.47840 * 111.00178 * 190.71556 * 10 9 7 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.08997 * 109.88742 * 242.66510 * 11 10 9 24 24 H 1.09000 * 109.88557 * 3.85348 * 11 10 9 25 25 H 1.09003 * 110.70864 * 140.66988 * 12 11 10 26 26 H 1.09003 * 110.70775 * 263.72575 * 12 11 10 27 27 H 1.09007 * 109.47076 * 53.54425 * 15 13 12 28 28 H 1.09000 * 109.46992 * 173.54019 * 15 13 12 29 29 H 0.96700 * 116.99908 * 179.97438 * 18 16 15 30 30 H 1.09005 * 110.37490 * 332.47029 * 19 10 9 31 31 H 1.09002 * 110.37399 * 94.80649 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9091 -3.7095 1.2920 12 6 2.6622 -5.1289 1.8448 13 6 2.3085 -5.9431 0.5724 14 1 3.2102 -6.2587 0.0476 15 6 1.4296 -7.1466 0.9185 16 6 2.2200 -8.1233 1.7503 17 8 3.3685 -7.8814 2.0374 18 8 1.6480 -9.2616 2.1733 19 6 1.5193 -4.8997 -0.2572 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.9772 -3.5492 1.1454 24 1 2.5121 -2.9675 1.9848 25 1 3.5636 -5.5215 2.3153 26 1 1.8303 -5.1289 2.5492 27 1 0.5590 -6.8106 1.4819 28 1 1.1020 -7.6334 -0.0001 29 1 2.1949 -9.8570 2.7037 30 1 0.4840 -4.8508 0.0807 31 1 1.5618 -5.1474 -1.3178 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084380784.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:40 Heat of formation + Delta-G solvation = -122.534816 kcal Electronic energy + Delta-G solvation = -14186.100615 eV Core-core repulsion = 11658.922425 eV Total energy + Delta-G solvation = -2527.178191 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33782 -39.68918 -37.06130 -35.37353 -33.74690 -30.87942 -29.25446 -27.32730 -24.43437 -22.94155 -21.57179 -20.91226 -18.96127 -18.34706 -17.76740 -16.91245 -16.76910 -16.42820 -15.84265 -14.77279 -14.57747 -14.26072 -13.94268 -13.60073 -13.54545 -13.27567 -12.78744 -12.54553 -12.47282 -12.26743 -12.06373 -11.87675 -11.76762 -11.52756 -11.41382 -11.23030 -10.60866 -8.99247 -8.20633 -6.30906 1.28578 1.40762 1.44033 1.52125 2.17501 2.40955 3.11426 3.32745 3.71223 3.83274 3.89612 4.26789 4.38419 4.48241 4.62963 4.65735 4.81494 4.89385 4.96829 5.05852 5.09646 5.20204 5.29044 5.40305 5.66073 5.69510 6.06117 6.32907 6.61787 6.84959 7.07051 7.39098 8.90007 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.077525 B = 0.005862 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.089208 B = 4775.601182 C = 4946.909447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.205 3.795 10 N -0.544 5.544 11 C 0.052 3.948 12 C -0.126 4.126 13 C -0.074 4.074 14 H 0.087 0.913 15 C -0.100 4.100 16 C 0.486 3.514 17 O -0.547 6.547 18 O -0.514 6.514 19 C 0.045 3.955 20 H 0.265 0.735 21 H 0.005 0.995 22 H -0.034 1.034 23 H 0.062 0.938 24 H 0.033 0.967 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.136 0.864 29 H 0.426 0.574 30 H 0.042 0.958 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 -16.098 3.329 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.079 3.921 10 N -0.269 5.269 11 C -0.076 4.076 12 C -0.165 4.165 13 C -0.093 4.093 14 H 0.106 0.894 15 C -0.138 4.138 16 C 0.330 3.670 17 O -0.437 6.437 18 O -0.328 6.328 19 C -0.083 4.083 20 H 0.074 0.926 21 H 0.023 0.977 22 H -0.016 1.016 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.154 0.846 29 H 0.288 0.712 30 H 0.060 0.940 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.270 -15.551 2.776 15.959 hybrid contribution -0.022 0.619 0.996 1.173 sum 2.249 -14.932 3.772 15.564 Atomic orbital electron populations 1.70065 1.07626 1.28008 1.51703 1.25895 0.95775 1.03113 0.94719 0.85446 0.78202 0.77976 0.79056 1.19359 1.20547 1.19434 1.21449 0.93516 0.91401 1.50229 0.92452 1.19537 0.90011 0.89055 0.93518 1.63540 1.28614 1.03446 1.31285 1.22622 0.98887 0.96303 0.89753 1.22814 1.02144 0.94128 0.97395 1.22020 0.98451 0.93030 0.95787 0.89442 1.21349 0.98525 0.92452 1.01472 1.23614 0.85501 0.80847 0.77049 1.90721 1.20543 1.76455 1.56007 1.84506 1.49644 1.31629 1.66989 1.23111 0.96055 0.88497 1.00600 0.92604 0.97686 1.01592 0.91961 0.94831 0.90155 0.91770 0.86427 0.84614 0.71239 0.93992 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.53 -30.86 8.66 25.60 0.22 -30.64 16 8 H 0.06 3.33 7.78 -2.91 -0.02 3.31 16 9 C 0.21 11.19 4.30 85.56 0.37 11.56 16 10 N -0.54 -24.36 5.15 -890.09 -4.58 -28.94 16 11 C 0.05 2.13 6.39 86.64 0.55 2.69 16 12 C -0.13 -4.02 5.65 31.77 0.18 -3.84 16 13 C -0.07 -2.04 2.62 -9.41 -0.02 -2.06 16 14 H 0.09 2.48 8.07 -2.39 -0.02 2.46 16 15 C -0.10 -1.95 5.33 29.84 0.16 -1.79 16 16 C 0.49 10.08 8.12 71.23 0.58 10.66 16 17 O -0.55 -15.18 15.39 21.96 0.34 -14.84 16 18 O -0.51 -7.57 13.42 -51.41 -0.69 -8.26 16 19 C 0.05 1.54 6.15 86.77 0.53 2.07 16 20 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 21 H 0.01 0.29 8.07 -2.39 -0.02 0.27 16 22 H -0.03 -1.96 7.96 -2.39 -0.02 -1.98 16 23 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.03 1.52 7.31 -2.39 -0.02 1.50 16 25 H 0.08 2.51 7.22 -2.39 -0.02 2.49 16 26 H 0.06 1.95 8.02 -2.39 -0.02 1.93 16 27 H 0.12 2.08 8.11 -2.38 -0.02 2.06 16 28 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.43 2.79 9.10 -74.06 -0.67 2.12 16 30 H 0.04 1.43 7.71 -2.38 -0.02 1.41 16 31 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -70.73 262.87 0.86 -69.87 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: 0.45 Total: 2.23 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 3.03 Total: -10.72 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -4.30 Total: -85.36 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.35 Total: -23.11 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -70.73 0.86 -69.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084380784.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.660 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds