Wall clock time and date at job start Mon Mar 30 2020 02:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.48534 * 111.00077 * 52.60129 * 10 9 7 12 12 C 1.54939 * 103.22788 * 159.72179 * 11 10 9 13 13 C 1.54597 * 102.91903 * 322.58459 * 12 11 10 14 14 H 1.09005 * 110.30677 * 263.03891 * 13 12 11 15 15 C 1.53002 * 110.30944 * 140.87754 * 13 12 11 16 16 C 1.50697 * 109.47170 * 69.28101 * 15 13 12 17 17 O 1.20826 * 120.00125 * 0.02562 * 16 15 13 18 18 O 1.34230 * 119.99819 * 180.02562 * 16 15 13 19 19 C 1.47908 * 110.99838 * 169.99481 * 10 9 7 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 22 22 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 23 23 H 1.09001 * 110.66846 * 278.15343 * 11 10 9 24 24 H 1.09002 * 110.66909 * 41.28537 * 11 10 9 25 25 H 1.08995 * 110.72085 * 204.22753 * 12 11 10 26 26 H 1.08999 * 110.87631 * 81.01131 * 12 11 10 27 27 H 1.08995 * 109.47056 * 189.28431 * 15 13 12 28 28 H 1.09000 * 109.46715 * 309.28127 * 15 13 12 29 29 H 0.96695 * 117.00136 * 179.97438 * 18 16 15 30 30 H 1.09002 * 109.91663 * 333.50935 * 19 10 9 31 31 H 1.08994 * 109.91110 * 94.60598 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 3.3850 -3.3615 -1.1021 12 6 4.3600 -4.5525 -1.2796 13 6 5.7442 -3.9030 -1.0509 14 1 6.2057 -3.6500 -2.0055 15 6 6.6488 -4.8469 -0.2561 16 6 7.0145 -6.0318 -1.1124 17 8 6.5950 -6.1128 -2.2426 18 8 7.8062 -6.9972 -0.6196 19 6 5.4600 -2.6255 -0.2394 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6797 -0.8895 22 1 3.8746 -0.6808 0.8905 23 1 2.3943 -3.7147 -0.8159 24 1 3.3339 -2.7669 -2.0142 25 1 4.2881 -4.9629 -2.2868 26 1 4.1688 -5.3253 -0.5351 27 1 7.5552 -4.3184 0.0391 28 1 6.1223 -5.1907 0.6342 29 1 8.0128 -7.7376 -1.2061 30 1 5.7713 -1.7483 -0.8066 31 1 5.9913 -2.6603 0.7116 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084380786.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:42 Heat of formation + Delta-G solvation = -93.619036 kcal Electronic energy + Delta-G solvation = -14234.703577 eV Core-core repulsion = 11708.779269 eV Total energy + Delta-G solvation = -2525.924308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.41058 -38.33815 -36.19579 -33.65001 -32.05221 -29.60062 -27.89391 -25.91608 -22.30917 -21.83410 -20.02800 -19.60675 -18.09836 -16.94073 -16.53634 -15.98504 -15.11988 -14.70488 -14.04606 -13.52370 -13.27743 -13.10566 -12.56069 -12.41075 -12.01866 -11.67183 -11.44136 -11.16436 -10.92429 -10.58905 -10.53959 -10.44723 -10.30242 -10.25010 -9.77370 -9.17272 -8.58541 -7.47676 -6.06114 -4.04309 2.16020 2.97926 3.28521 3.35787 3.37861 4.41587 4.70572 4.84363 4.90700 5.12604 5.26544 5.38671 5.50028 5.57297 5.81065 5.85019 6.05713 6.22299 6.30242 6.40349 6.44514 6.62752 6.71090 6.85969 7.04184 7.48926 7.81663 7.89762 7.96491 8.62470 9.00650 9.55331 11.06739 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.072179 B = 0.006250 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.830880 B = 4479.241674 C = 4679.960501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.268 1.268 6 H -0.286 1.286 7 C -0.516 4.516 8 H 0.081 0.919 9 C 0.152 3.848 10 N -0.509 5.509 11 C 0.054 3.946 12 C -0.119 4.119 13 C -0.088 4.088 14 H 0.079 0.921 15 C -0.103 4.103 16 C 0.477 3.523 17 O -0.512 6.512 18 O -0.522 6.522 19 C 0.036 3.964 20 H 0.264 0.736 21 H -0.010 1.010 22 H 0.026 0.974 23 H 0.083 0.917 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.406 0.594 30 H 0.040 0.960 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.729 -9.668 -1.244 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.193 1.193 6 H -0.212 1.212 7 C -0.554 4.554 8 H 0.099 0.901 9 C 0.025 3.975 10 N -0.233 5.233 11 C -0.074 4.074 12 C -0.157 4.157 13 C -0.107 4.107 14 H 0.098 0.902 15 C -0.140 4.140 16 C 0.319 3.681 17 O -0.400 6.400 18 O -0.334 6.334 19 C -0.093 4.093 20 H 0.074 0.926 21 H 0.008 0.992 22 H 0.044 0.956 23 H 0.101 0.899 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.264 0.736 30 H 0.058 0.942 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.216 -9.428 -0.782 17.076 hybrid contribution 0.728 0.880 -1.140 1.614 sum 14.944 -8.548 -1.923 17.323 Atomic orbital electron populations 1.69898 1.06150 1.26879 1.50939 1.24916 0.94746 0.98917 0.94686 0.86840 0.80273 0.83924 0.78613 1.20084 1.19294 1.21220 1.21098 0.88731 0.94886 1.50675 0.90070 1.20363 0.97096 0.84884 0.95177 1.64739 1.01175 1.14941 1.42424 1.22997 0.98259 0.92916 0.93206 1.22635 0.93491 0.98081 1.01507 1.21890 0.95954 0.94529 0.98348 0.90241 1.21545 1.02059 0.91485 0.98930 1.23748 0.74293 0.83346 0.86684 1.90720 1.51247 1.77566 1.20430 1.84563 1.64363 1.34155 1.50342 1.22930 0.92540 0.95200 0.98581 0.92644 0.99189 0.95572 0.89859 0.94006 0.91146 0.91604 0.87807 0.87053 0.73561 0.94189 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.08 2.50 6.77 -52.49 -0.36 2.14 16 9 C 0.15 3.72 3.86 -4.98 -0.02 3.70 16 10 N -0.51 -10.69 5.39 -231.88 -1.25 -11.94 16 11 C 0.05 1.07 5.55 -1.90 -0.01 1.06 16 12 C -0.12 -1.89 5.70 -24.87 -0.14 -2.04 16 13 C -0.09 -1.25 2.60 -89.26 -0.23 -1.48 16 14 H 0.08 1.14 7.91 -51.93 -0.41 0.73 16 15 C -0.10 -1.13 4.98 -27.88 -0.14 -1.26 16 16 C 0.48 5.51 8.13 36.00 0.29 5.80 16 17 O -0.51 -7.51 15.78 -18.75 -0.30 -7.81 16 18 O -0.52 -4.62 13.42 -39.26 -0.53 -5.15 16 19 C 0.04 0.60 6.35 -2.75 -0.02 0.58 16 20 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 21 H -0.01 -0.24 6.87 -51.93 -0.36 -0.59 16 22 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 23 H 0.08 1.77 7.15 -51.93 -0.37 1.40 16 24 H 0.04 0.87 8.02 -51.93 -0.42 0.46 16 25 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 26 H 0.07 1.00 7.76 -51.93 -0.40 0.60 16 27 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.11 1.17 7.99 -51.93 -0.42 0.75 16 29 H 0.41 1.92 9.10 45.56 0.41 2.33 16 30 H 0.04 0.67 7.57 -51.93 -0.39 0.28 16 31 H 0.07 1.06 7.69 -51.93 -0.40 0.66 16 LS Contribution 257.22 15.07 3.88 3.88 Total: -1.00 -32.89 257.22 -6.27 -39.15 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -3.50 Total: -1.41 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.68 Total: -6.76 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.48 Total: -38.81 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.82 Total: -12.96 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.89 -6.27 -39.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084380786.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.465 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds