Wall clock time and date at job start Mon Mar 30 2020 02:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.48534 * 111.00077 * 52.60129 * 10 9 7 12 12 C 1.54939 * 103.22788 * 159.72179 * 11 10 9 13 13 C 1.54597 * 102.91903 * 322.58459 * 12 11 10 14 14 H 1.09005 * 110.30677 * 263.03891 * 13 12 11 15 15 C 1.53002 * 110.30944 * 140.87754 * 13 12 11 16 16 C 1.50697 * 109.47170 * 69.28101 * 15 13 12 17 17 O 1.20826 * 120.00125 * 0.02562 * 16 15 13 18 18 O 1.34230 * 119.99819 * 180.02562 * 16 15 13 19 19 C 1.47908 * 110.99838 * 169.99481 * 10 9 7 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 22 22 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 23 23 H 1.09001 * 110.66846 * 278.15343 * 11 10 9 24 24 H 1.09002 * 110.66909 * 41.28537 * 11 10 9 25 25 H 1.08995 * 110.72085 * 204.22753 * 12 11 10 26 26 H 1.08999 * 110.87631 * 81.01131 * 12 11 10 27 27 H 1.08995 * 109.47056 * 189.28431 * 15 13 12 28 28 H 1.09000 * 109.46715 * 309.28127 * 15 13 12 29 29 H 0.96695 * 117.00136 * 179.97438 * 18 16 15 30 30 H 1.09002 * 109.91663 * 333.50935 * 19 10 9 31 31 H 1.08994 * 109.91110 * 94.60598 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 3.3850 -3.3615 -1.1021 12 6 4.3600 -4.5525 -1.2796 13 6 5.7442 -3.9030 -1.0509 14 1 6.2057 -3.6500 -2.0055 15 6 6.6488 -4.8469 -0.2561 16 6 7.0145 -6.0318 -1.1124 17 8 6.5950 -6.1128 -2.2426 18 8 7.8062 -6.9972 -0.6196 19 6 5.4600 -2.6255 -0.2394 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6797 -0.8895 22 1 3.8746 -0.6808 0.8905 23 1 2.3943 -3.7147 -0.8159 24 1 3.3339 -2.7669 -2.0142 25 1 4.2881 -4.9629 -2.2868 26 1 4.1688 -5.3253 -0.5351 27 1 7.5552 -4.3184 0.0391 28 1 6.1223 -5.1907 0.6342 29 1 8.0128 -7.7376 -1.2061 30 1 5.7713 -1.7483 -0.8066 31 1 5.9913 -2.6603 0.7116 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084380786.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:42 Heat of formation + Delta-G solvation = -119.130284 kcal Electronic energy + Delta-G solvation = -14235.809828 eV Core-core repulsion = 11708.779269 eV Total energy + Delta-G solvation = -2527.030559 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.33157 -39.71960 -37.05068 -35.38165 -33.86514 -31.05595 -29.51575 -27.40395 -24.11524 -22.84371 -21.70262 -20.77589 -19.00174 -18.82390 -17.73287 -16.91867 -16.70390 -16.18612 -15.79871 -15.08675 -14.68400 -14.42430 -13.98765 -13.97468 -13.45892 -12.98733 -12.86813 -12.48255 -12.39550 -12.15700 -12.05397 -11.88454 -11.68718 -11.58982 -11.45166 -11.22455 -10.79769 -9.15285 -8.29552 -6.34191 1.30999 1.34912 1.36461 1.47156 2.22113 2.34048 3.03754 3.35610 3.64365 3.74382 3.93697 4.34076 4.42595 4.49575 4.60198 4.68912 4.80064 4.85428 4.92961 4.96157 5.07380 5.17623 5.20477 5.34312 5.50529 5.70777 5.97421 6.19059 6.60354 6.72375 7.08661 7.30181 8.86717 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.072179 B = 0.006250 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.830880 B = 4479.241674 C = 4679.960501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.252 1.252 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.040 0.960 9 C 0.161 3.839 10 N -0.523 5.523 11 C 0.053 3.947 12 C -0.107 4.107 13 C -0.079 4.079 14 H 0.080 0.920 15 C -0.098 4.098 16 C 0.484 3.516 17 O -0.550 6.550 18 O -0.514 6.514 19 C 0.035 3.965 20 H 0.267 0.733 21 H -0.011 1.011 22 H 0.033 0.967 23 H 0.054 0.946 24 H 0.023 0.977 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.122 0.878 29 H 0.425 0.575 30 H 0.040 0.960 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.645 -9.515 -0.676 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.176 1.176 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.058 0.942 9 C 0.033 3.967 10 N -0.247 5.247 11 C -0.076 4.076 12 C -0.145 4.145 13 C -0.098 4.098 14 H 0.098 0.902 15 C -0.136 4.136 16 C 0.328 3.672 17 O -0.441 6.441 18 O -0.328 6.328 19 C -0.093 4.093 20 H 0.076 0.924 21 H 0.006 0.994 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.153 0.847 28 H 0.140 0.860 29 H 0.287 0.713 30 H 0.058 0.942 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.168 -9.316 -0.203 19.534 hybrid contribution -0.209 0.700 -1.310 1.500 sum 16.960 -8.617 -1.513 19.083 Atomic orbital electron populations 1.70055 1.08192 1.28187 1.52411 1.25891 0.95630 1.03293 0.94141 0.85672 0.79241 0.78381 0.79405 1.18677 1.17556 1.20803 1.21355 0.91179 0.93520 1.50339 0.94216 1.20145 0.94221 0.87176 0.95147 1.64653 1.04214 1.12814 1.43044 1.22915 0.98216 0.94354 0.92069 1.22525 0.93589 0.96511 1.01864 1.21762 0.95329 0.94060 0.98649 0.90187 1.21493 1.02753 0.91021 0.98306 1.23747 0.73808 0.83667 0.85953 1.90724 1.52876 1.78450 1.22043 1.84509 1.63315 1.34378 1.50583 1.23061 0.89403 0.96398 1.00456 0.92386 0.99352 0.94886 0.92767 0.95842 0.91099 0.90690 0.84670 0.86008 0.71332 0.94202 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 2 C 0.01 0.46 5.47 84.66 0.46 0.93 16 3 Si 0.95 44.29 27.47 68.60 1.88 46.17 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 7 C -0.53 -30.87 9.11 25.60 0.23 -30.63 16 8 H 0.04 2.59 6.77 -2.91 -0.02 2.57 16 9 C 0.16 7.80 3.86 85.55 0.33 8.13 16 10 N -0.52 -21.70 5.39 -887.54 -4.78 -26.49 16 11 C 0.05 2.14 5.55 86.65 0.48 2.62 16 12 C -0.11 -3.31 5.70 31.80 0.18 -3.13 16 13 C -0.08 -2.04 2.60 -9.91 -0.03 -2.07 16 14 H 0.08 2.10 7.91 -2.38 -0.02 2.08 16 15 C -0.10 -1.79 4.98 29.85 0.15 -1.64 16 16 C 0.48 9.69 8.13 71.23 0.58 10.27 16 17 O -0.55 -15.04 15.78 21.97 0.35 -14.69 16 18 O -0.51 -7.30 13.42 -51.42 -0.69 -7.99 16 19 C 0.03 1.05 6.35 86.44 0.55 1.60 16 20 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 21 H -0.01 -0.54 6.87 -2.38 -0.02 -0.56 16 22 H 0.03 1.56 7.57 -2.39 -0.02 1.54 16 23 H 0.05 2.47 7.15 -2.39 -0.02 2.45 16 24 H 0.02 1.02 8.02 -2.39 -0.02 1.00 16 25 H 0.07 2.20 7.85 -2.39 -0.02 2.18 16 26 H 0.07 2.18 7.76 -2.39 -0.02 2.16 16 27 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.12 2.04 7.99 -2.39 -0.02 2.03 16 29 H 0.43 2.65 9.10 -74.06 -0.67 1.98 16 30 H 0.04 1.23 7.57 -2.39 -0.02 1.21 16 31 H 0.10 2.50 7.69 -2.39 -0.02 2.48 16 Total: -1.00 -72.62 257.22 0.39 -72.23 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 0.40 Total: 4.26 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 2.94 Total: -13.91 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -4.48 Total: -86.06 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.34 Total: -22.68 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -72.62 0.39 -72.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084380786.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.903 kcal (2) G-P(sol) polarization free energy of solvation -72.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds