Wall clock time and date at job start Mon Mar 30 2020 02:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47083 * 239.99951 * 3 2 1 5 5 H 1.48500 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47024 * 120.00002 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 163.08661 * 7 2 1 9 9 N 1.36936 * 120.00005 * 343.09585 * 7 2 1 10 10 C 1.46928 * 120.63013 * 151.82709 * 9 7 2 11 11 C 1.53196 * 108.89135 * 126.29699 * 10 9 7 12 12 C 1.53349 * 109.15353 * 54.57497 * 11 10 9 13 13 C 1.52996 * 109.42091 * 178.67328 * 12 11 10 14 14 C 1.50692 * 109.47235 * 295.12797 * 13 12 11 15 15 O 1.20829 * 120.00324 * 0.02562 * 14 13 12 16 16 O 1.34230 * 120.00264 * 179.97438 * 14 13 12 17 17 C 1.53044 * 109.60552 * 298.71437 * 12 11 10 18 18 C 1.46924 * 120.63127 * 331.80020 * 9 7 2 19 19 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.58355 * 246.14871 * 10 9 7 21 21 H 1.08994 * 109.59076 * 6.43731 * 10 9 7 22 22 H 1.08998 * 109.49426 * 174.65878 * 11 10 9 23 23 H 1.09000 * 109.49457 * 294.75312 * 11 10 9 24 24 H 1.09003 * 109.42058 * 58.74791 * 12 11 10 25 25 H 1.08996 * 109.47035 * 55.12944 * 13 12 11 26 26 H 1.08998 * 109.47266 * 175.12632 * 13 12 11 27 27 H 0.96700 * 117.00510 * 180.02562 * 16 14 13 28 28 H 1.08992 * 109.49619 * 301.41603 * 17 12 11 29 29 H 1.08999 * 109.52313 * 181.33616 * 17 12 11 30 30 H 1.09000 * 109.58664 * 353.42162 * 18 9 7 31 31 H 1.08996 * 109.58580 * 113.70091 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3699 -2.3623 0.3459 10 6 1.8139 -3.6529 -0.1982 11 6 2.0707 -4.6187 0.9629 12 6 0.8131 -4.7007 1.8366 13 6 1.0515 -5.6892 2.9798 14 6 1.2399 -7.0738 2.4156 15 8 1.1892 -7.2517 1.2216 16 8 1.4650 -8.1093 3.2394 17 6 0.4984 -3.3190 2.4146 18 6 0.2263 -2.3402 1.2680 19 1 -0.4849 0.8400 0.0004 20 1 1.0402 -4.0608 -0.8485 21 1 2.7330 -3.5129 -0.7671 22 1 2.3088 -5.6065 0.5685 23 1 2.9057 -4.2544 1.5613 24 1 -0.0271 -5.0411 1.2314 25 1 1.9446 -5.3973 3.5322 26 1 0.1919 -5.6838 3.6500 27 1 1.5799 -8.9783 2.8310 28 1 1.3481 -2.9671 2.9994 29 1 -0.3818 -3.3836 3.0543 30 1 0.0992 -1.3345 1.6685 31 1 -0.6773 -2.6386 0.7365 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086573387.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:03 Heat of formation + Delta-G solvation = -107.808940 kcal Electronic energy + Delta-G solvation = -14606.075804 eV Core-core repulsion = 12079.536175 eV Total energy + Delta-G solvation = -2526.539629 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.32536 -39.17693 -37.04129 -35.48732 -33.10337 -31.49608 -29.80466 -26.54159 -23.97369 -23.61073 -21.73534 -20.64207 -19.00111 -18.61398 -17.31238 -16.86941 -16.80563 -15.73591 -15.29934 -15.13458 -14.65287 -14.39787 -14.04018 -13.53790 -13.22916 -12.95680 -12.71534 -12.57782 -12.34327 -12.27441 -12.02031 -11.82634 -11.64050 -11.58361 -11.07400 -10.94900 -10.52378 -8.67114 -7.86511 -5.32691 1.31845 1.47579 1.49925 1.57203 2.25047 2.52402 3.27400 3.71423 3.83918 3.95866 4.13504 4.48359 4.54903 4.62700 4.71834 4.74648 4.81546 4.98048 5.05377 5.24338 5.30154 5.34421 5.42355 5.54850 5.65101 5.75433 5.80057 6.40297 7.10631 7.16103 7.87209 8.40000 9.19799 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.070381 B = 0.007066 C = 0.006881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.741106 B = 3961.519860 C = 4067.978167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.267 4.267 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.142 3.858 11 C -0.120 4.120 12 C -0.064 4.064 13 C -0.103 4.103 14 C 0.483 3.517 15 O -0.548 6.548 16 O -0.514 6.514 17 C -0.121 4.121 18 C 0.173 3.827 19 H 0.251 0.749 20 H 0.002 0.998 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.123 0.877 26 H 0.130 0.870 27 H 0.425 0.575 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.056 0.944 31 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.537 -12.457 8.926 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.397 4.397 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.017 3.983 11 C -0.159 4.159 12 C -0.083 4.083 13 C -0.140 4.140 14 C 0.327 3.673 15 O -0.439 6.439 16 O -0.327 6.327 17 C -0.160 4.160 18 C 0.048 3.952 19 H 0.060 0.940 20 H 0.020 0.980 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.141 0.859 26 H 0.148 0.852 27 H 0.286 0.714 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.008 0.992 Dipole moment (debyes) X Y Z Total from point charges 2.378 -11.999 8.770 15.051 hybrid contribution 0.179 0.434 -0.832 0.956 sum 2.557 -11.565 7.937 14.258 Atomic orbital electron populations 1.70192 1.06748 1.25992 1.55367 1.25839 0.96074 1.01586 1.01130 0.85301 0.77546 0.78970 0.78382 1.20278 1.21848 1.20131 1.19506 0.92807 0.86135 1.41240 0.91809 1.44366 1.36126 1.02142 1.50933 1.20988 0.96607 0.86328 0.94419 1.22064 0.97409 0.98915 0.97493 1.20853 0.98020 0.94112 0.95335 1.21494 1.07182 0.85949 0.99373 1.23802 0.70824 0.88193 0.84457 1.90713 1.48339 1.85970 1.18858 1.84510 1.83093 1.21080 1.44037 1.22035 1.01622 0.94286 0.98014 1.20634 0.87436 0.97946 0.89212 0.94030 0.98035 0.93397 0.90996 0.92301 0.92707 0.85919 0.85214 0.71417 0.91970 0.90232 0.92561 0.99172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 11.20 21.65 0.24 -56.42 16 2 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 3 Si 0.97 45.48 29.59 68.60 2.03 47.51 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.27 -15.21 9.58 84.03 0.81 -14.41 16 8 H 0.06 3.55 7.89 -2.91 -0.02 3.53 16 9 N -0.61 -32.26 2.99 -699.11 -2.09 -34.35 16 10 C 0.14 6.46 6.51 86.36 0.56 7.03 16 11 C -0.12 -4.35 5.13 30.78 0.16 -4.19 16 12 C -0.06 -2.08 1.80 -10.66 -0.02 -2.10 16 13 C -0.10 -2.28 5.29 29.84 0.16 -2.12 16 14 C 0.48 11.43 8.04 71.23 0.57 12.00 16 15 O -0.55 -17.29 14.72 21.95 0.32 -16.96 16 16 O -0.51 -8.59 13.42 -51.41 -0.69 -9.28 16 17 C -0.12 -4.31 5.36 30.67 0.16 -4.14 16 18 C 0.17 8.53 5.30 86.36 0.46 8.99 16 19 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 20 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 21 H 0.05 2.14 7.93 -2.39 -0.02 2.13 16 22 H 0.07 2.53 5.95 -2.39 -0.01 2.51 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.05 1.97 7.96 -2.39 -0.02 1.95 16 25 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.13 2.20 8.14 -2.39 -0.02 2.19 16 27 H 0.42 3.63 9.10 -74.06 -0.67 2.96 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 3.10 6.06 -2.39 -0.01 3.08 16 31 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 Total: -1.00 -70.51 255.36 3.54 -66.97 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: 0.45 Total: 3.96 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 3.28 Total: -1.44 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -1.85 Total: -90.77 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.37 Total: -26.24 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.51 3.54 -66.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086573387.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.834 kcal (2) G-P(sol) polarization free energy of solvation -70.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds