Wall clock time and date at job start Mon Mar 30 2020 03:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.46069 * 118.52018 * 119.99999 * 13 3 2 15 15 C 1.53128 * 109.91279 * 160.55664 * 14 13 3 16 16 C 1.53485 * 108.36568 * 47.98394 * 15 14 13 17 17 O 1.45437 * 108.10755 * 298.26800 * 16 15 14 18 18 C 1.33730 * 118.52638 * 299.73620 * 13 3 2 19 19 O 1.21515 * 118.45615 * 2.26469 * 18 13 3 20 20 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 22 22 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 23 23 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 24 24 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 26 26 H 1.08993 * 109.40067 * 280.69896 * 14 13 3 27 27 H 1.09006 * 109.39173 * 40.42866 * 14 13 3 28 28 H 1.09003 * 109.68667 * 167.70050 * 15 14 13 29 29 H 1.09001 * 109.69079 * 288.22382 * 15 14 13 30 30 H 1.09000 * 109.73399 * 57.91699 * 16 15 14 31 31 H 1.08998 * 109.73973 * 178.57015 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4361 2.1285 2.0883 11 1 6.4412 -0.2952 2.1653 12 1 6.6156 0.8506 0.0352 13 7 1.6526 2.0974 -1.2518 14 6 0.8053 3.2853 -1.1842 15 6 0.9123 4.0773 -2.4904 16 6 0.7464 3.1009 -3.6629 17 8 1.8287 2.1315 -3.6006 18 6 2.0949 1.5840 -2.4047 19 8 2.7654 0.5712 -2.3681 20 1 -0.3634 -1.0275 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 3.8288 -0.0530 2.9544 26 1 -0.2302 2.9830 -1.0279 27 1 1.1273 3.9127 -0.3530 28 1 0.1271 4.8324 -2.5274 29 1 1.8882 4.5594 -2.5486 30 1 -0.2121 2.5881 -3.5820 31 1 0.7937 3.6462 -4.6055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681477.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:06 Heat of formation + Delta-G solvation = -77.269478 kcal Electronic energy + Delta-G solvation = -15264.478985 eV Core-core repulsion = 12739.263647 eV Total energy + Delta-G solvation = -2525.215338 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.23237 -36.74815 -35.62930 -33.26084 -31.53616 -30.51773 -27.16794 -25.61956 -23.56641 -22.62225 -20.28641 -18.91201 -17.20340 -16.58537 -15.91706 -15.43359 -14.54264 -14.35893 -13.85251 -13.55928 -13.37002 -12.77400 -12.64810 -11.80207 -11.68988 -11.26758 -11.10000 -11.06385 -10.83047 -10.68016 -10.20186 -10.09862 -9.88354 -9.62536 -9.35005 -8.79688 -8.27284 -7.63954 -5.96961 -3.99988 3.35165 3.38437 3.42300 3.50296 3.77315 4.19541 4.52040 4.80780 4.88565 5.15902 5.32221 5.37227 5.55514 5.67880 5.96851 6.12705 6.25360 6.30377 6.47494 6.58824 6.96054 7.14618 7.26780 7.45102 7.80975 7.92937 8.12481 8.32765 8.81444 8.97276 9.20205 9.63834 11.08237 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034598 B = 0.011611 C = 0.010426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.104767 B = 2410.908423 C = 2684.888076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.143 4.143 3 C 0.286 3.714 4 H 0.046 0.954 5 C -0.502 4.502 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.605 5.605 14 C 0.109 3.891 15 C -0.173 4.173 16 C 0.063 3.937 17 O -0.363 6.363 18 C 0.643 3.357 19 O -0.510 6.510 20 H 0.034 0.966 21 H 0.040 0.960 22 H 0.029 0.971 23 H 0.064 0.936 24 H 0.101 0.899 25 H 0.261 0.739 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 7.099 -6.008 12.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.181 4.181 3 C 0.187 3.813 4 H 0.064 0.936 5 C -0.540 4.540 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.726 3.274 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.350 5.350 14 C -0.015 4.015 15 C -0.211 4.211 16 C -0.012 4.012 17 O -0.276 6.276 18 C 0.396 3.604 19 O -0.394 6.394 20 H 0.053 0.947 21 H 0.059 0.941 22 H 0.048 0.952 23 H 0.083 0.917 24 H 0.119 0.881 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.329 6.453 -6.071 11.499 hybrid contribution 0.746 0.256 0.266 0.832 sum -6.583 6.709 -5.806 11.048 Atomic orbital electron populations 1.21793 0.99628 0.99197 0.99263 1.22052 0.91327 1.00134 1.04611 1.18857 0.95055 0.89603 0.77787 0.93585 1.21301 0.90907 1.37229 1.04605 0.92419 1.24829 0.98348 0.95172 0.95621 1.69861 1.34861 1.39274 1.09593 0.86486 0.85543 0.77282 0.78096 1.20900 1.21201 1.19839 1.47745 1.51215 1.28547 1.07534 1.21431 0.94861 0.87612 0.97636 1.22517 1.04356 0.98854 0.95376 1.23242 0.89050 0.89283 0.99655 1.86670 1.52255 1.56637 1.32059 1.17847 0.80681 0.83011 0.78885 1.90965 1.41594 1.22473 1.84346 0.94735 0.94066 0.95167 0.91719 0.88066 0.92919 0.92340 0.90133 0.88979 0.89931 0.91379 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.80 37.16 0.36 -2.52 16 2 C -0.14 -3.57 5.09 -26.73 -0.14 -3.71 16 3 C 0.29 7.19 2.01 -69.09 -0.14 7.05 16 4 H 0.05 1.18 7.83 -51.93 -0.41 0.78 16 5 C -0.50 -14.26 7.46 -34.44 -0.26 -14.51 16 6 H 0.06 1.72 7.42 -52.49 -0.39 1.33 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.90 -25.55 11.30 55.43 0.63 -24.92 16 9 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.60 -12.97 2.24 -173.93 -0.39 -13.36 16 14 C 0.11 1.69 6.38 -4.21 -0.03 1.66 16 15 C -0.17 -2.09 6.26 -26.41 -0.17 -2.25 16 16 C 0.06 0.81 7.21 37.41 0.27 1.08 16 17 O -0.36 -7.11 10.49 -39.23 -0.41 -7.52 16 18 C 0.64 14.96 7.56 53.59 0.41 15.37 16 19 O -0.51 -14.16 13.69 -19.41 -0.27 -14.43 16 20 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.03 0.57 7.75 -51.93 -0.40 0.17 16 23 H 0.06 1.76 5.80 -51.93 -0.30 1.46 16 24 H 0.10 2.79 5.96 -51.93 -0.31 2.48 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.23 8.06 -51.93 -0.42 0.81 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 253.78 15.07 3.82 3.82 Total: -1.00 -32.47 253.78 -5.74 -38.21 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.32 Total: -2.88 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 0.22 Total: 3.79 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.24 Total: -38.28 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.68 Total: -21.95 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.47 -5.74 -38.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681477.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.059 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds