Wall clock time and date at job start Mon Mar 30 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.46069 * 118.52018 * 119.99999 * 13 3 2 15 15 C 1.53128 * 109.91279 * 160.55664 * 14 13 3 16 16 C 1.53485 * 108.36568 * 47.98394 * 15 14 13 17 17 O 1.45437 * 108.10755 * 298.26800 * 16 15 14 18 18 C 1.33730 * 118.52638 * 299.73620 * 13 3 2 19 19 O 1.21515 * 118.45615 * 2.26469 * 18 13 3 20 20 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 22 22 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 23 23 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 24 24 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 26 26 H 1.08993 * 109.40067 * 280.69896 * 14 13 3 27 27 H 1.09006 * 109.39173 * 40.42866 * 14 13 3 28 28 H 1.09003 * 109.68667 * 167.70050 * 15 14 13 29 29 H 1.09001 * 109.69079 * 288.22382 * 15 14 13 30 30 H 1.09000 * 109.73399 * 57.91699 * 16 15 14 31 31 H 1.08998 * 109.73973 * 178.57015 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4361 2.1285 2.0883 11 1 6.4412 -0.2952 2.1653 12 1 6.6156 0.8506 0.0352 13 7 1.6526 2.0974 -1.2518 14 6 0.8053 3.2853 -1.1842 15 6 0.9123 4.0773 -2.4904 16 6 0.7464 3.1009 -3.6629 17 8 1.8287 2.1315 -3.6006 18 6 2.0949 1.5840 -2.4047 19 8 2.7654 0.5712 -2.3681 20 1 -0.3634 -1.0275 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 3.8288 -0.0530 2.9544 26 1 -0.2302 2.9830 -1.0279 27 1 1.1273 3.9127 -0.3530 28 1 0.1271 4.8324 -2.5274 29 1 1.8882 4.5594 -2.5486 30 1 -0.2121 2.5881 -3.5820 31 1 0.7937 3.6462 -4.6055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681477.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:05 Heat of formation + Delta-G solvation = -98.995556 kcal Electronic energy + Delta-G solvation = -15265.421099 eV Core-core repulsion = 12739.263647 eV Total energy + Delta-G solvation = -2526.157452 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.82107 -38.39604 -37.34476 -35.07413 -33.37791 -32.03724 -29.00946 -27.02514 -25.38525 -24.22939 -22.02030 -20.34476 -18.99698 -18.32651 -17.56488 -17.12378 -16.44181 -15.79555 -15.37439 -15.23520 -14.71442 -14.61892 -14.14914 -13.54868 -13.32636 -12.98740 -12.80341 -12.61395 -12.55531 -12.34845 -12.12686 -11.68241 -11.60822 -11.47475 -11.20775 -10.73430 -10.36393 -9.41051 -8.11612 -6.21056 1.35643 1.39324 1.49757 1.86645 2.04386 2.43658 2.82261 3.15091 3.75308 3.83753 4.19192 4.31791 4.51735 4.57396 4.59947 4.68552 4.75896 4.80096 4.99479 5.11747 5.22839 5.36573 5.41039 5.62738 5.68859 5.91938 6.07478 6.30332 6.79133 7.15390 7.36559 7.54302 8.91351 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034598 B = 0.011611 C = 0.010426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.104767 B = 2410.908423 C = 2684.888076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.138 4.138 3 C 0.291 3.709 4 H 0.042 0.958 5 C -0.520 4.520 6 H 0.032 0.968 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.287 1.287 13 N -0.603 5.603 14 C 0.093 3.907 15 C -0.161 4.161 16 C 0.050 3.950 17 O -0.377 6.377 18 C 0.642 3.358 19 O -0.573 6.573 20 H 0.047 0.953 21 H 0.053 0.947 22 H 0.044 0.956 23 H 0.035 0.965 24 H 0.071 0.929 25 H 0.264 0.736 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.144 0.856 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.340 8.808 -6.450 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.176 4.176 3 C 0.190 3.810 4 H 0.060 0.940 5 C -0.559 4.559 6 H 0.050 0.950 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.213 1.213 13 N -0.347 5.347 14 C -0.028 4.028 15 C -0.199 4.199 16 C -0.023 4.023 17 O -0.290 6.290 18 C 0.396 3.604 19 O -0.461 6.461 20 H 0.066 0.934 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.162 0.838 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.925 8.222 -6.520 13.776 hybrid contribution 1.161 -0.198 0.337 1.225 sum -7.764 8.024 -6.183 12.763 Atomic orbital electron populations 1.21634 0.95856 1.00574 1.00479 1.21853 0.94666 0.99516 1.01611 1.18540 0.93207 0.89957 0.79256 0.94024 1.21470 0.92857 1.37529 1.04027 0.94997 1.25476 1.02060 0.94966 0.95503 1.69942 1.36069 1.39378 1.09776 0.85674 0.81161 0.78129 0.77347 1.19160 1.20345 1.21316 1.47631 1.51427 1.29896 1.05796 1.21881 0.94965 0.85930 1.00063 1.22529 1.05744 0.98956 0.92638 1.23859 0.87798 0.88575 1.02077 1.86615 1.54486 1.58109 1.29776 1.17924 0.80029 0.82542 0.79929 1.90911 1.44163 1.25350 1.85680 0.93382 0.92841 0.93727 0.94656 0.91041 0.92688 0.89700 0.89970 0.83790 0.91007 0.89509 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.80 71.98 0.71 -4.35 16 2 C -0.14 -7.03 5.09 30.59 0.16 -6.87 16 3 C 0.29 14.83 2.01 44.25 0.09 14.92 16 4 H 0.04 2.15 7.83 -2.39 -0.02 2.13 16 5 C -0.52 -30.43 7.46 25.60 0.19 -30.24 16 6 H 0.03 1.98 7.42 -2.91 -0.02 1.96 16 7 C 0.02 1.09 5.30 84.66 0.45 1.53 16 8 N -0.91 -52.69 11.30 21.45 0.24 -52.45 16 9 Si 0.95 46.50 29.54 68.60 2.03 48.52 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 13 N -0.60 -25.58 2.24 -935.99 -2.10 -27.68 16 14 C 0.09 2.66 6.38 86.50 0.55 3.21 16 15 C -0.16 -3.24 6.26 30.80 0.19 -3.04 16 16 C 0.05 1.10 7.21 72.14 0.52 1.62 16 17 O -0.38 -14.37 10.49 -50.99 -0.54 -14.91 16 18 C 0.64 30.14 7.56 129.95 0.98 31.12 16 19 O -0.57 -33.14 13.69 19.91 0.27 -32.87 16 20 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 22 H 0.04 1.61 7.75 -2.39 -0.02 1.59 16 23 H 0.03 1.99 5.80 -2.39 -0.01 1.98 16 24 H 0.07 4.05 5.96 -2.39 -0.01 4.03 16 25 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.08 2.32 8.06 -2.38 -0.02 2.30 16 28 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -74.13 253.78 4.85 -69.28 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: 1.11 Total: 2.21 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 3.84 Total: 7.89 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -1.86 Total: -80.13 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -0.26 Total: -47.77 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -74.13 4.85 -69.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681477.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.720 kcal (2) G-P(sol) polarization free energy of solvation -74.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds