Wall clock time and date at job start Mon Mar 30 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 110.41563 * 2 1 4 4 O 1.21277 * 120.00391 * 262.69002 * 3 2 1 5 5 N 1.34783 * 120.00182 * 82.69003 * 3 2 1 6 6 C 1.46499 * 120.00232 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.46893 * 180.02562 * 6 5 3 8 8 H 1.07998 * 120.00041 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99820 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00105 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99790 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47153 * 90.00266 * 11 9 7 13 13 H 1.48503 * 109.46874 * 210.00071 * 11 9 7 14 14 H 1.48496 * 109.47522 * 329.99890 * 11 9 7 15 15 C 1.54477 * 110.37491 * 237.69340 * 2 1 3 16 16 C 1.54510 * 104.18108 * 217.25643 * 15 2 1 17 17 C 1.54478 * 104.06500 * 359.93120 * 16 15 2 18 18 O 1.44415 * 104.80258 * 23.97587 * 17 16 15 19 19 H 1.09006 * 109.46669 * 182.30956 * 1 2 3 20 20 H 1.08998 * 109.47481 * 302.30772 * 1 2 3 21 21 H 1.08994 * 109.46981 * 62.31070 * 1 2 3 22 22 H 0.97006 * 119.99623 * 0.02562 * 5 3 2 23 23 H 1.08993 * 109.47433 * 300.00122 * 6 5 3 24 24 H 1.09002 * 109.46835 * 60.00578 * 6 5 3 25 25 H 0.96996 * 119.99934 * 179.97438 * 10 9 7 26 26 H 1.09002 * 110.51371 * 98.54158 * 15 2 1 27 27 H 1.08994 * 110.51108 * 335.96806 * 15 2 1 28 28 H 1.09000 * 110.51039 * 118.57850 * 16 15 2 29 29 H 1.09007 * 110.50911 * 241.14516 * 16 15 2 30 30 H 1.08998 * 110.37372 * 142.81215 * 17 16 15 31 31 H 1.09003 * 110.36949 * 265.14479 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0557 1.4124 0.0000 4 8 2.3925 1.9341 -1.0417 5 7 2.1516 2.0958 1.1577 6 6 2.6632 3.4685 1.1578 7 6 2.6694 4.0022 2.5672 8 1 2.3270 3.3807 3.3814 9 6 3.1123 5.2838 2.8171 10 7 3.1173 5.7496 4.0470 11 14 3.7038 6.3588 1.4087 12 1 2.5589 7.1280 0.8584 13 1 4.7395 7.3000 1.9056 14 1 4.2834 5.5031 0.3424 15 6 2.0679 -0.7739 -1.2239 16 6 3.3174 -1.5082 -0.6883 17 6 3.3901 -1.0908 0.7972 18 8 2.0369 -0.7251 1.1444 19 1 -0.3633 -1.0269 0.0414 20 1 -0.3634 0.5492 0.8685 21 1 -0.3633 0.4775 -0.9099 22 1 1.8826 1.6783 1.9910 23 1 3.6785 3.4780 0.7617 24 1 2.0242 4.0944 0.5348 25 1 3.4292 6.6511 4.2228 26 1 2.3430 -0.0838 -2.0215 27 1 1.3268 -1.4902 -1.5787 28 1 3.1930 -2.5875 -0.7762 29 1 4.2100 -1.1829 -1.2228 30 1 3.7264 -1.9269 1.4103 31 1 4.0571 -0.2373 0.9193 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087230086.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:38 Heat of formation + Delta-G solvation = -92.647309 kcal Electronic energy + Delta-G solvation = -14641.841131 eV Core-core repulsion = 12115.958960 eV Total energy + Delta-G solvation = -2525.882171 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.33509 -37.73167 -34.38965 -32.41492 -32.18887 -31.51574 -27.98253 -25.97562 -23.66994 -21.83646 -21.03387 -19.49698 -17.64142 -16.39231 -16.01558 -15.75955 -15.13666 -14.48660 -14.07959 -13.74228 -13.34431 -13.10765 -12.49214 -12.39214 -12.38687 -11.93878 -11.66165 -11.41574 -11.08169 -10.86800 -10.78052 -10.74350 -10.28319 -9.97153 -9.48635 -8.93968 -8.77809 -8.15885 -6.20895 -4.23118 3.10381 3.26169 3.32623 3.40738 3.73664 3.99307 4.33153 4.63515 4.69500 5.01318 5.12138 5.14181 5.30890 5.41357 5.58140 5.63528 5.78924 5.83846 5.88907 5.98573 6.10362 6.14185 6.70602 6.82935 7.05172 7.23409 7.38564 8.13311 8.52353 8.74908 8.89936 9.38874 10.91128 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045824 B = 0.007956 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.893247 B = 3518.634573 C = 3618.421688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.082 3.918 3 C 0.490 3.510 4 O -0.556 6.556 5 N -0.692 5.692 6 C 0.218 3.782 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.078 3.922 10 N -0.892 5.892 11 Si 0.877 3.123 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.261 1.261 15 C -0.137 4.137 16 C -0.153 4.153 17 C 0.040 3.960 18 O -0.358 6.358 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.075 0.925 22 H 0.402 0.598 23 H 0.025 0.975 24 H 0.021 0.979 25 H 0.268 0.732 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 -13.428 -7.906 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.039 3.961 3 C 0.274 3.726 4 O -0.436 6.436 5 N -0.339 5.339 6 C 0.096 3.904 7 C -0.581 4.581 8 H 0.098 0.902 9 C -0.126 4.126 10 N -0.529 5.529 11 Si 0.703 3.297 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.186 1.186 15 C -0.175 4.175 16 C -0.191 4.191 17 C -0.036 4.036 18 O -0.277 6.277 19 H 0.091 0.909 20 H 0.089 0.911 21 H 0.094 0.906 22 H 0.236 0.764 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.912 -12.901 -8.294 15.456 hybrid contribution 0.373 0.561 -0.289 0.733 sum -1.539 -12.340 -8.583 15.110 Atomic orbital electron populations 1.21723 0.90618 1.03345 1.03508 1.22639 0.96502 0.89778 0.87154 1.20779 0.79167 0.88039 0.84633 1.90628 1.50574 1.70469 1.31909 1.46179 1.62754 1.16302 1.08715 1.19530 0.94316 0.78238 0.98288 1.21101 1.45355 1.00111 0.91529 0.90154 1.24797 0.94599 0.97443 0.95767 1.69881 1.46399 1.17423 1.19206 0.86822 0.79289 0.80782 0.82816 1.19834 1.20856 1.18583 1.22885 0.97334 0.99212 0.98023 1.22928 0.98916 1.00854 0.96419 1.23478 0.84765 1.00282 0.95121 1.89182 1.27328 1.73388 1.37771 0.90864 0.91096 0.90570 0.76353 0.95753 0.96099 0.92261 0.88595 0.90229 0.90720 0.90450 0.88750 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.84 37.16 0.33 -1.41 16 2 C 0.08 1.26 1.12 -90.99 -0.10 1.16 16 3 C 0.49 9.77 6.14 -10.98 -0.07 9.71 16 4 O -0.56 -12.71 15.63 5.56 0.09 -12.62 16 5 N -0.69 -14.89 5.47 -61.47 -0.34 -15.22 16 6 C 0.22 5.51 4.50 -5.19 -0.02 5.49 16 7 C -0.54 -15.22 9.83 -34.44 -0.34 -15.55 16 8 H 0.08 2.36 7.84 -52.49 -0.41 1.95 16 9 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 10 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 11 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 15 C -0.14 -1.79 6.11 -25.16 -0.15 -1.95 16 16 C -0.15 -1.79 7.09 -25.16 -0.18 -1.97 16 17 C 0.04 0.54 7.29 37.93 0.28 0.81 16 18 O -0.36 -5.50 10.63 -35.23 -0.37 -5.88 16 19 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 20 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 21 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.40 8.11 7.94 -40.82 -0.32 7.79 16 23 H 0.02 0.65 7.20 -51.93 -0.37 0.27 16 24 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.10 1.41 6.84 -51.93 -0.36 1.05 16 27 H 0.08 0.85 7.87 -51.93 -0.41 0.44 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 LS Contribution 260.66 15.07 3.93 3.93 Total: -1.00 -31.68 260.66 -5.33 -37.01 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.38 Total: 3.38 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -0.36 Total: -1.58 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.44 Total: -41.20 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.29 Total: -18.50 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.68 -5.33 -37.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087230086.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.642 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds