Wall clock time and date at job start Mon Mar 30 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 110.41563 * 2 1 4 4 O 1.21277 * 120.00391 * 262.69002 * 3 2 1 5 5 N 1.34783 * 120.00182 * 82.69003 * 3 2 1 6 6 C 1.46499 * 120.00232 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.46893 * 180.02562 * 6 5 3 8 8 H 1.07998 * 120.00041 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99820 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00105 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99790 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47153 * 90.00266 * 11 9 7 13 13 H 1.48503 * 109.46874 * 210.00071 * 11 9 7 14 14 H 1.48496 * 109.47522 * 329.99890 * 11 9 7 15 15 C 1.54477 * 110.37491 * 237.69340 * 2 1 3 16 16 C 1.54510 * 104.18108 * 217.25643 * 15 2 1 17 17 C 1.54478 * 104.06500 * 359.93120 * 16 15 2 18 18 O 1.44415 * 104.80258 * 23.97587 * 17 16 15 19 19 H 1.09006 * 109.46669 * 182.30956 * 1 2 3 20 20 H 1.08998 * 109.47481 * 302.30772 * 1 2 3 21 21 H 1.08994 * 109.46981 * 62.31070 * 1 2 3 22 22 H 0.97006 * 119.99623 * 0.02562 * 5 3 2 23 23 H 1.08993 * 109.47433 * 300.00122 * 6 5 3 24 24 H 1.09002 * 109.46835 * 60.00578 * 6 5 3 25 25 H 0.96996 * 119.99934 * 179.97438 * 10 9 7 26 26 H 1.09002 * 110.51371 * 98.54158 * 15 2 1 27 27 H 1.08994 * 110.51108 * 335.96806 * 15 2 1 28 28 H 1.09000 * 110.51039 * 118.57850 * 16 15 2 29 29 H 1.09007 * 110.50911 * 241.14516 * 16 15 2 30 30 H 1.08998 * 110.37372 * 142.81215 * 17 16 15 31 31 H 1.09003 * 110.36949 * 265.14479 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0557 1.4124 0.0000 4 8 2.3925 1.9341 -1.0417 5 7 2.1516 2.0958 1.1577 6 6 2.6632 3.4685 1.1578 7 6 2.6694 4.0022 2.5672 8 1 2.3270 3.3807 3.3814 9 6 3.1123 5.2838 2.8171 10 7 3.1173 5.7496 4.0470 11 14 3.7038 6.3588 1.4087 12 1 2.5589 7.1280 0.8584 13 1 4.7395 7.3000 1.9056 14 1 4.2834 5.5031 0.3424 15 6 2.0679 -0.7739 -1.2239 16 6 3.3174 -1.5082 -0.6883 17 6 3.3901 -1.0908 0.7972 18 8 2.0369 -0.7251 1.1444 19 1 -0.3633 -1.0269 0.0414 20 1 -0.3634 0.5492 0.8685 21 1 -0.3633 0.4775 -0.9099 22 1 1.8826 1.6783 1.9910 23 1 3.6785 3.4780 0.7617 24 1 2.0242 4.0944 0.5348 25 1 3.4292 6.6511 4.2228 26 1 2.3430 -0.0838 -2.0215 27 1 1.3268 -1.4902 -1.5787 28 1 3.1930 -2.5875 -0.7762 29 1 4.2100 -1.1829 -1.2228 30 1 3.7264 -1.9269 1.4103 31 1 4.0571 -0.2373 0.9193 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087230086.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:38 Heat of formation + Delta-G solvation = -116.471149 kcal Electronic energy + Delta-G solvation = -14642.874210 eV Core-core repulsion = 12115.958960 eV Total energy + Delta-G solvation = -2526.915250 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67998 -39.20614 -36.28750 -34.47167 -33.33172 -32.64080 -29.98840 -26.99900 -25.32686 -23.40893 -22.31481 -21.07742 -19.31313 -18.21015 -17.32254 -17.05107 -16.74422 -16.23736 -15.77141 -15.17098 -14.78913 -14.40828 -14.30313 -14.14512 -13.41778 -13.28500 -13.11937 -12.75100 -12.70881 -12.48568 -11.97448 -11.92483 -11.84436 -11.69587 -11.41470 -10.95399 -10.45085 -10.01895 -8.43085 -6.51141 1.30271 1.31959 1.44642 1.52510 2.24649 2.30061 2.76544 2.91512 3.59997 3.63836 3.74803 4.06349 4.17710 4.35866 4.58590 4.63921 4.68793 4.81058 4.84093 4.94897 4.95330 5.02531 5.12569 5.14972 5.20047 5.42961 5.66754 6.04764 6.49024 6.73878 7.09187 7.26505 8.71931 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045824 B = 0.007956 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.893247 B = 3518.634573 C = 3618.421688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.084 3.916 3 C 0.488 3.512 4 O -0.586 6.586 5 N -0.696 5.696 6 C 0.231 3.769 7 C -0.550 4.550 8 H 0.055 0.945 9 C 0.027 3.973 10 N -0.930 5.930 11 Si 0.940 3.060 12 H -0.263 1.263 13 H -0.270 1.270 14 H -0.261 1.261 15 C -0.135 4.135 16 C -0.148 4.148 17 C 0.031 3.969 18 O -0.366 6.366 19 H 0.103 0.897 20 H 0.061 0.939 21 H 0.082 0.918 22 H 0.407 0.593 23 H 0.013 0.987 24 H 0.014 0.986 25 H 0.274 0.726 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.349 -14.813 -9.230 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.041 3.959 3 C 0.274 3.726 4 O -0.468 6.468 5 N -0.345 5.345 6 C 0.108 3.892 7 C -0.588 4.588 8 H 0.073 0.927 9 C -0.174 4.174 10 N -0.568 5.568 11 Si 0.763 3.237 12 H -0.188 1.188 13 H -0.195 1.195 14 H -0.185 1.185 15 C -0.173 4.173 16 C -0.185 4.185 17 C -0.046 4.046 18 O -0.285 6.285 19 H 0.122 0.878 20 H 0.080 0.920 21 H 0.101 0.899 22 H 0.243 0.757 23 H 0.031 0.969 24 H 0.032 0.968 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.095 0.905 30 H 0.140 0.860 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.178 -14.313 -9.613 17.378 hybrid contribution 0.451 0.938 0.182 1.057 sum -1.726 -13.374 -9.431 16.456 Atomic orbital electron populations 1.21790 0.88527 1.05286 1.03455 1.22718 0.97939 0.86683 0.88548 1.21736 0.77816 0.89788 0.83277 1.90603 1.51653 1.71758 1.32802 1.46095 1.63284 1.15215 1.09896 1.19145 0.93664 0.80255 0.96186 1.21266 1.45128 1.00190 0.92228 0.92678 1.25631 0.94641 0.98846 0.98246 1.69984 1.47413 1.18248 1.21205 0.85821 0.79297 0.79037 0.79521 1.18757 1.19513 1.18542 1.22946 0.98819 0.99278 0.96248 1.22955 0.98263 1.02625 0.94672 1.23675 0.83467 1.00248 0.97185 1.89189 1.28225 1.72930 1.38149 0.87815 0.92006 0.89945 0.75738 0.96944 0.96766 0.91722 0.90468 0.86917 0.87509 0.90478 0.85986 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.84 71.98 0.64 -2.49 16 2 C 0.08 2.44 1.12 -11.04 -0.01 2.43 16 3 C 0.49 19.33 6.14 87.66 0.54 19.87 16 4 O -0.59 -26.82 15.63 -3.02 -0.05 -26.87 16 5 N -0.70 -30.33 5.47 -466.78 -2.56 -32.89 16 6 C 0.23 11.81 4.50 85.63 0.38 12.20 16 7 C -0.55 -31.49 9.83 25.60 0.25 -31.24 16 8 H 0.06 3.35 7.84 -2.91 -0.02 3.33 16 9 C 0.03 1.55 5.47 84.66 0.46 2.01 16 10 N -0.93 -56.41 13.96 21.45 0.30 -56.11 16 11 Si 0.94 44.61 27.47 68.60 1.88 46.50 16 12 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.26 -12.29 6.54 99.48 0.65 -11.64 16 15 C -0.14 -3.19 6.11 31.61 0.19 -2.99 16 16 C -0.15 -3.02 7.09 31.61 0.22 -2.80 16 17 C 0.03 0.76 7.29 72.48 0.53 1.29 16 18 O -0.37 -10.59 10.63 -148.98 -1.58 -12.17 16 19 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 20 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.41 16.74 7.94 -92.70 -0.74 16.01 16 23 H 0.01 0.67 7.20 -2.39 -0.02 0.66 16 24 H 0.01 0.75 7.57 -2.39 -0.02 0.74 16 25 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 26 H 0.08 2.15 6.84 -2.39 -0.02 2.13 16 27 H 0.11 1.92 7.87 -2.39 -0.02 1.90 16 28 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.04 1.09 7.94 -2.39 -0.02 1.07 16 Total: -1.00 -68.30 260.66 1.53 -66.76 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.33 Total: 16.50 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 3.21 Total: -1.72 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -2.26 Total: -89.00 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -1.63 Total: -39.04 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.50 kcal Total: -68.30 1.53 -66.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087230086.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.706 kcal (2) G-P(sol) polarization free energy of solvation -68.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds