Wall clock time and date at job start Mon Mar 30 2020 02:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50709 * 109.86657 * 2 1 4 4 O 1.21281 * 119.99753 * 96.00825 * 3 2 1 5 5 N 1.34778 * 120.00069 * 276.00813 * 3 2 1 6 6 C 1.46493 * 119.99700 * 180.02562 * 5 3 2 7 7 C 1.50706 * 109.47128 * 179.97438 * 6 5 3 8 8 H 1.08005 * 119.99758 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00102 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47057 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 300.00068 * 11 9 7 14 14 H 1.48504 * 109.47102 * 60.00417 * 11 9 7 15 15 C 1.54097 * 109.88063 * 121.00687 * 2 1 3 16 16 C 1.54805 * 104.18651 * 121.60598 * 15 2 1 17 17 C 1.54999 * 102.09381 * 20.88343 * 16 15 2 18 18 O 1.43743 * 110.00194 * 238.91830 * 2 1 3 19 19 H 1.09003 * 109.47646 * 59.29558 * 1 2 3 20 20 H 1.09000 * 109.47029 * 179.29630 * 1 2 3 21 21 H 1.09002 * 109.47765 * 299.29691 * 1 2 3 22 22 H 0.96998 * 120.00160 * 359.97438 * 5 3 2 23 23 H 1.09001 * 109.47786 * 60.00101 * 6 5 3 24 24 H 1.09006 * 109.47401 * 299.99686 * 6 5 3 25 25 H 0.97001 * 119.99646 * 359.97438 * 10 9 7 26 26 H 1.08998 * 110.48509 * 240.28216 * 15 2 1 27 27 H 1.08999 * 110.48288 * 2.93015 * 15 2 1 28 28 H 1.09003 * 110.91085 * 139.07995 * 16 15 2 29 29 H 1.08994 * 110.90926 * 262.68286 * 16 15 2 30 30 H 1.08996 * 110.61872 * 81.47870 * 17 16 15 31 31 H 1.09004 * 110.61722 * 204.47975 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4174 0.0000 4 8 2.3516 1.9503 1.0446 5 7 2.1562 2.0927 -1.1608 6 6 2.6546 3.4703 -1.1608 7 6 2.6860 3.9932 -2.5738 8 1 2.3669 3.3622 -3.3903 9 6 3.1218 5.2770 -2.8243 10 7 3.5108 6.0451 -1.8302 11 14 3.1614 5.9248 -4.5760 12 1 3.6653 7.3217 -4.5759 13 1 4.0590 5.0743 -5.3982 14 1 1.7905 5.8937 -5.1463 15 6 2.0540 -0.7465 1.2421 16 6 2.9227 -1.8881 0.6601 17 6 3.2418 -1.3607 -0.7620 18 8 2.0216 -0.6973 -1.1568 19 1 -0.3634 0.5247 -0.8836 20 1 -0.3633 -1.0276 -0.0126 21 1 -0.3635 0.5029 0.8962 22 1 1.9091 1.6664 -1.9963 23 1 3.6612 3.4926 -0.7431 24 1 1.9966 4.0948 -0.5564 25 1 3.4906 5.7086 -0.9207 26 1 2.6597 -0.0826 1.8588 27 1 1.2247 -1.1547 1.8198 28 1 3.8359 -2.0169 1.2412 29 1 2.3592 -2.8199 0.6121 30 1 4.0708 -0.6537 -0.7321 31 1 3.4649 -2.1872 -1.4368 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087230087.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:40 Heat of formation + Delta-G solvation = -124.922941 kcal Electronic energy + Delta-G solvation = -14580.751829 eV Core-core repulsion = 12053.470082 eV Total energy + Delta-G solvation = -2527.281747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.71147 -39.35151 -36.55171 -34.54262 -33.42554 -32.59892 -28.97369 -27.03402 -25.46023 -23.83635 -22.48267 -21.05181 -19.51175 -18.26069 -17.54360 -17.04433 -16.55561 -15.96728 -15.66872 -15.18183 -14.73415 -14.56508 -14.28351 -14.13784 -13.47413 -13.32448 -13.17025 -12.77274 -12.58588 -12.51577 -12.04131 -11.92774 -11.78273 -11.53807 -11.01275 -10.80249 -10.45903 -10.05247 -8.84920 -6.60517 1.46342 1.53308 1.62311 1.81883 2.25197 2.53924 2.68437 3.03312 3.51397 3.62580 3.70755 4.03983 4.12402 4.31058 4.54007 4.63914 4.67636 4.76306 4.80813 4.87131 4.88884 4.98299 5.08536 5.12650 5.34337 5.47103 5.69885 6.01792 6.25809 6.69168 7.12688 7.30127 8.54406 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048885 B = 0.007256 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.636179 B = 3858.120607 C = 4005.364481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.091 3.909 3 C 0.482 3.518 4 O -0.595 6.595 5 N -0.693 5.693 6 C 0.252 3.748 7 C -0.633 4.633 8 H 0.073 0.927 9 C -0.031 4.031 10 N -0.927 5.927 11 Si 1.130 2.870 12 H -0.283 1.283 13 H -0.264 1.264 14 H -0.263 1.263 15 C -0.140 4.140 16 C -0.141 4.141 17 C 0.031 3.969 18 O -0.369 6.369 19 H 0.060 0.940 20 H 0.106 0.894 21 H 0.075 0.925 22 H 0.408 0.592 23 H -0.017 1.017 24 H -0.014 1.014 25 H 0.253 0.747 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.038 0.962 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 -17.418 0.827 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.048 3.952 3 C 0.268 3.732 4 O -0.477 6.477 5 N -0.341 5.341 6 C 0.128 3.872 7 C -0.670 4.670 8 H 0.091 0.909 9 C -0.229 4.229 10 N -0.563 5.563 11 Si 0.949 3.051 12 H -0.208 1.208 13 H -0.189 1.189 14 H -0.188 1.188 15 C -0.178 4.178 16 C -0.178 4.178 17 C -0.045 4.045 18 O -0.288 6.288 19 H 0.079 0.921 20 H 0.125 0.875 21 H 0.094 0.906 22 H 0.244 0.756 23 H 0.001 0.999 24 H 0.004 0.996 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.129 0.871 28 H 0.112 0.888 29 H 0.125 0.875 30 H 0.056 0.944 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.759 -15.721 0.434 16.170 hybrid contribution -0.077 -0.879 1.199 1.489 sum -3.836 -16.599 1.633 17.115 Atomic orbital electron populations 1.21879 0.88906 1.05299 1.03159 1.22380 0.97797 0.86433 0.88580 1.22021 0.77500 0.90354 0.83285 1.90606 1.52449 1.71626 1.33027 1.46090 1.63759 1.14740 1.09559 1.18723 0.91614 0.79447 0.97370 1.22426 1.49729 1.02531 0.92352 0.90933 1.27698 0.91657 0.93760 1.09792 1.70912 1.45209 1.39489 1.00656 0.82797 0.78231 0.75835 0.68268 1.20815 1.18865 1.18776 1.22990 1.01782 0.97262 0.95795 1.23156 1.01006 0.98685 0.94957 1.23872 0.86266 0.96687 0.97626 1.88898 1.40378 1.66840 1.32680 0.92071 0.87501 0.90572 0.75598 0.99920 0.99616 0.93747 0.91510 0.87054 0.88838 0.87469 0.94356 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.65 71.98 0.62 -2.72 16 2 C 0.09 2.79 1.10 -11.17 -0.01 2.78 16 3 C 0.48 20.81 6.68 87.66 0.59 21.39 16 4 O -0.59 -30.19 15.55 -3.03 -0.05 -30.24 16 5 N -0.69 -32.40 5.47 -466.77 -2.55 -34.95 16 6 C 0.25 14.41 4.74 85.64 0.41 14.81 16 7 C -0.63 -36.34 9.28 25.60 0.24 -36.11 16 8 H 0.07 3.88 7.60 -2.91 -0.02 3.86 16 9 C -0.03 -1.77 5.46 84.65 0.46 -1.30 16 10 N -0.93 -58.59 13.65 21.45 0.29 -58.29 16 11 Si 1.13 49.05 29.90 68.60 2.05 51.10 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 14 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 15 C -0.14 -3.53 6.15 31.58 0.19 -3.33 16 16 C -0.14 -2.65 7.15 31.89 0.23 -2.42 16 17 C 0.03 0.74 7.66 72.67 0.56 1.30 16 18 O -0.37 -10.77 10.27 -148.98 -1.53 -12.29 16 19 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 20 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 21 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 22 H 0.41 17.27 7.84 -92.71 -0.73 16.55 16 23 H -0.02 -1.07 8.01 -2.39 -0.02 -1.09 16 24 H -0.01 -0.87 8.01 -2.38 -0.02 -0.89 16 25 H 0.25 16.61 7.22 -92.71 -0.67 15.94 16 26 H 0.07 2.09 6.72 -2.39 -0.02 2.07 16 27 H 0.11 2.13 7.70 -2.39 -0.02 2.11 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -73.36 263.12 1.99 -71.37 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.49 Total: 18.91 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 3.28 Total: -5.60 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -2.26 Total: -93.25 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.58 Total: -42.54 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.05 Total: 51.10 kcal Total: -73.36 1.99 -71.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087230087.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.556 kcal (2) G-P(sol) polarization free energy of solvation -73.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds