Wall clock time and date at job start Mon Mar 30 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99924 * 2 1 4 4 H 1.48506 * 109.47156 * 270.00441 * 3 2 1 5 5 H 1.48503 * 109.47189 * 29.99743 * 3 2 1 6 6 H 1.48499 * 109.47343 * 150.00435 * 3 2 1 7 7 C 1.37876 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99559 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47051 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47076 * 180.02562 * 10 9 7 12 12 C 1.41795 * 111.00214 * 170.00349 * 11 10 9 13 13 C 1.52576 * 114.00814 * 187.91388 * 12 11 10 14 14 C 1.51089 * 110.24307 * 278.78244 * 13 12 11 15 15 O 1.46709 * 109.82155 * 88.01872 * 14 13 12 16 16 C 1.35556 * 117.01135 * 320.86099 * 15 14 13 17 17 O 1.20835 * 119.02609 * 139.86233 * 16 15 14 18 18 C 1.48176 * 111.00123 * 295.82777 * 11 10 9 19 19 H 0.96995 * 119.99969 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46930 * 59.99962 * 9 7 2 21 21 H 1.08994 * 109.46963 * 300.00212 * 9 7 2 22 22 H 1.08998 * 109.46813 * 60.00186 * 10 9 7 23 23 H 1.09003 * 109.47188 * 300.00489 * 10 9 7 24 24 H 1.09003 * 108.57089 * 309.08293 * 12 11 10 25 25 H 1.09001 * 108.57429 * 66.88652 * 12 11 10 26 26 H 1.09000 * 109.34381 * 39.02385 * 13 12 11 27 27 H 1.09005 * 109.33700 * 158.70277 * 13 12 11 28 28 H 1.09002 * 109.41056 * 208.12431 * 14 13 12 29 29 H 1.08998 * 109.41056 * 327.98347 * 14 13 12 30 30 H 1.09000 * 109.42272 * 283.88328 * 18 11 10 31 31 H 1.09009 * 109.42354 * 43.69520 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5110 -4.9342 -0.0012 12 6 2.3860 -6.0261 -0.2310 13 6 1.6739 -7.3599 -0.4353 14 6 1.2979 -7.9615 0.8987 15 8 -0.0197 -7.4674 1.3136 16 6 -0.2958 -6.1643 1.0617 17 8 -1.4013 -5.8628 0.6782 18 6 0.7231 -5.0932 1.2437 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 2.8720 -3.6043 0.8895 23 1 2.8721 -3.6043 -0.8905 24 1 2.9831 -5.8118 -1.1174 25 1 3.0561 -6.1198 0.6236 26 1 0.7722 -7.2010 -1.0267 27 1 2.3363 -8.0454 -0.9641 28 1 1.2661 -9.0475 0.8103 29 1 2.0406 -7.6803 1.6452 30 1 1.3899 -5.3626 2.0627 31 1 0.2232 -4.1534 1.4788 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108294541.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:53 Heat of formation + Delta-G solvation = -79.559878 kcal Electronic energy + Delta-G solvation = -14510.550608 eV Core-core repulsion = 11985.235951 eV Total energy + Delta-G solvation = -2525.314657 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46040 -37.55633 -36.71358 -33.45433 -32.22372 -29.76005 -28.07541 -25.87050 -23.88655 -21.22637 -20.75348 -19.75440 -17.73323 -16.98748 -16.23205 -15.90238 -15.08792 -14.53601 -14.45447 -13.99339 -13.57027 -13.24949 -12.94108 -12.45637 -12.21510 -11.71293 -11.44577 -11.22132 -10.98147 -10.89163 -10.59028 -10.53306 -10.06555 -9.80024 -9.49342 -9.17861 -8.36934 -8.00555 -6.01904 -4.06058 2.06618 3.30547 3.32654 3.37070 3.39290 4.02750 4.43435 4.50610 4.65374 4.77212 5.00229 5.16715 5.25755 5.33486 5.48336 5.52498 5.78564 5.87305 5.98098 6.15524 6.27405 6.79587 7.05140 7.22233 7.43296 7.68457 7.75209 7.79881 8.01830 8.35956 9.00950 9.58103 11.09119 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054523 B = 0.006959 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.416960 B = 4022.500529 C = 4381.498994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.070 3.930 11 N -0.535 5.535 12 C 0.055 3.945 13 C -0.166 4.166 14 C 0.075 3.925 15 O -0.386 6.386 16 C 0.493 3.507 17 O -0.449 6.449 18 C 0.012 3.988 19 H 0.262 0.738 20 H 0.028 0.972 21 H 0.019 0.981 22 H 0.028 0.972 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.025 0.975 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.068 -14.075 1.800 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.056 4.056 11 N -0.262 5.262 12 C -0.075 4.075 13 C -0.204 4.204 14 C 0.001 3.999 15 O -0.306 6.306 16 C 0.332 3.668 17 O -0.328 6.328 18 C -0.117 4.117 19 H 0.071 0.929 20 H 0.047 0.953 21 H 0.037 0.963 22 H 0.046 0.954 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.043 0.957 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.919 -13.928 1.316 14.829 hybrid contribution 1.229 0.951 0.624 1.675 sum 6.148 -12.977 1.940 14.490 Atomic orbital electron populations 1.69979 1.06029 1.26744 1.50041 1.25006 0.94828 0.99246 0.95179 0.86582 0.79740 0.83441 0.78134 1.20609 1.21190 1.19935 1.21127 0.92940 0.90881 1.51583 0.92684 1.19168 0.93920 0.90062 0.98162 1.22394 0.96596 0.86832 0.99731 1.60182 1.28641 1.03956 1.33440 1.21181 0.94269 0.90590 1.01447 1.22038 1.03414 0.97403 0.97564 1.23194 0.81460 0.99370 0.95860 1.86906 1.37835 1.28324 1.77540 1.22960 0.89170 0.82181 0.72496 1.90630 1.25672 1.81182 1.35286 1.22605 0.96319 0.99950 0.92787 0.92850 0.95348 0.96314 0.95405 0.91132 0.89975 0.95667 0.89438 0.88849 0.87645 0.91070 0.92433 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.59 9.11 -34.44 -0.31 -14.91 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.62 4.90 -27.88 -0.14 0.48 16 10 C 0.07 1.38 4.88 -3.83 -0.02 1.36 16 11 N -0.54 -9.31 4.48 -240.39 -1.08 -10.39 16 12 C 0.05 0.71 4.85 -6.72 -0.03 0.67 16 13 C -0.17 -1.79 5.51 -27.91 -0.15 -1.94 16 14 C 0.07 0.76 6.81 36.20 0.25 1.00 16 15 O -0.39 -5.81 10.65 -43.05 -0.46 -6.27 16 16 C 0.49 8.77 6.38 35.17 0.22 8.99 16 17 O -0.45 -9.76 17.88 -18.75 -0.34 -10.10 16 18 C 0.01 0.20 5.02 -5.11 -0.03 0.17 16 19 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 20 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 21 H 0.02 0.50 6.21 -51.93 -0.32 0.18 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 1.35 7.85 -51.93 -0.41 0.94 16 24 H 0.08 1.01 7.82 -51.93 -0.41 0.60 16 25 H 0.03 0.30 7.49 -51.93 -0.39 -0.09 16 26 H 0.09 1.17 7.59 -51.93 -0.39 0.77 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.62 7.50 -51.93 -0.39 0.23 16 30 H 0.06 0.82 8.03 -51.93 -0.42 0.41 16 31 H 0.13 2.53 5.85 -51.92 -0.30 2.22 16 LS Contribution 257.05 15.07 3.87 3.87 Total: -1.00 -32.39 257.05 -6.85 -39.24 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -4.26 Total: -4.10 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.31 Total: -2.57 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.34 Total: -36.45 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.79 Total: -16.37 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.39 -6.85 -39.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108294541.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.323 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds