Wall clock time and date at job start Mon Mar 30 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99924 * 2 1 4 4 H 1.48506 * 109.47156 * 270.00441 * 3 2 1 5 5 H 1.48503 * 109.47189 * 29.99743 * 3 2 1 6 6 H 1.48499 * 109.47343 * 150.00435 * 3 2 1 7 7 C 1.37876 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99559 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47051 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47076 * 180.02562 * 10 9 7 12 12 C 1.41795 * 111.00214 * 170.00349 * 11 10 9 13 13 C 1.52576 * 114.00814 * 187.91388 * 12 11 10 14 14 C 1.51089 * 110.24307 * 278.78244 * 13 12 11 15 15 O 1.46709 * 109.82155 * 88.01872 * 14 13 12 16 16 C 1.35556 * 117.01135 * 320.86099 * 15 14 13 17 17 O 1.20835 * 119.02609 * 139.86233 * 16 15 14 18 18 C 1.48176 * 111.00123 * 295.82777 * 11 10 9 19 19 H 0.96995 * 119.99969 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46930 * 59.99962 * 9 7 2 21 21 H 1.08994 * 109.46963 * 300.00212 * 9 7 2 22 22 H 1.08998 * 109.46813 * 60.00186 * 10 9 7 23 23 H 1.09003 * 109.47188 * 300.00489 * 10 9 7 24 24 H 1.09003 * 108.57089 * 309.08293 * 12 11 10 25 25 H 1.09001 * 108.57429 * 66.88652 * 12 11 10 26 26 H 1.09000 * 109.34381 * 39.02385 * 13 12 11 27 27 H 1.09005 * 109.33700 * 158.70277 * 13 12 11 28 28 H 1.09002 * 109.41056 * 208.12431 * 14 13 12 29 29 H 1.08998 * 109.41056 * 327.98347 * 14 13 12 30 30 H 1.09000 * 109.42272 * 283.88328 * 18 11 10 31 31 H 1.09009 * 109.42354 * 43.69520 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5110 -4.9342 -0.0012 12 6 2.3860 -6.0261 -0.2310 13 6 1.6739 -7.3599 -0.4353 14 6 1.2979 -7.9615 0.8987 15 8 -0.0197 -7.4674 1.3136 16 6 -0.2958 -6.1643 1.0617 17 8 -1.4013 -5.8628 0.6782 18 6 0.7231 -5.0932 1.2437 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 2.8720 -3.6043 0.8895 23 1 2.8721 -3.6043 -0.8905 24 1 2.9831 -5.8118 -1.1174 25 1 3.0561 -6.1198 0.6236 26 1 0.7722 -7.2010 -1.0267 27 1 2.3363 -8.0454 -0.9641 28 1 1.2661 -9.0475 0.8103 29 1 2.0406 -7.6803 1.6452 30 1 1.3899 -5.3626 2.0627 31 1 0.2232 -4.1534 1.4788 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108294541.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:53 Heat of formation + Delta-G solvation = -102.646113 kcal Electronic energy + Delta-G solvation = -14511.551703 eV Core-core repulsion = 11985.235951 eV Total energy + Delta-G solvation = -2526.315752 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.74476 -38.95376 -38.01144 -35.34840 -33.59109 -31.51207 -29.42926 -27.28972 -25.55117 -22.70384 -22.05154 -21.10791 -18.97588 -18.69031 -17.87476 -17.23423 -16.58834 -16.09915 -15.93397 -15.27578 -14.80088 -14.66375 -14.31868 -14.10027 -13.82387 -13.18514 -12.86780 -12.75591 -12.66574 -12.39793 -12.01412 -11.86047 -11.59912 -11.36548 -11.24081 -11.16085 -10.54579 -9.31913 -8.19087 -6.31656 0.73015 1.41792 1.43444 1.54307 2.12854 2.40550 2.78768 3.14624 3.35963 3.73959 3.82312 3.86348 4.22362 4.31386 4.41796 4.48489 4.64719 4.67017 4.82372 4.89692 5.03236 5.15032 5.45092 5.56762 5.73714 5.89688 6.02081 6.24523 6.28996 6.38784 6.86996 7.38375 8.93119 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054523 B = 0.006959 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.416960 B = 4022.500529 C = 4381.498994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.258 1.258 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.028 3.972 10 C 0.088 3.912 11 N -0.554 5.554 12 C 0.045 3.955 13 C -0.160 4.160 14 C 0.065 3.935 15 O -0.393 6.393 16 C 0.506 3.494 17 O -0.505 6.505 18 C 0.016 3.984 19 H 0.263 0.737 20 H -0.014 1.014 21 H -0.006 1.006 22 H 0.042 0.958 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.136 0.864 28 H 0.143 0.857 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.903 -15.319 2.135 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.580 4.580 8 H 0.087 0.913 9 C -0.009 4.009 10 C -0.038 4.038 11 N -0.282 5.282 12 C -0.083 4.083 13 C -0.198 4.198 14 C -0.007 4.007 15 O -0.313 6.313 16 C 0.347 3.653 17 O -0.388 6.388 18 C -0.112 4.112 19 H 0.071 0.929 20 H 0.005 0.995 21 H 0.012 0.988 22 H 0.060 0.940 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.154 0.846 28 H 0.161 0.839 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.802 -15.217 1.657 17.181 hybrid contribution 0.382 1.219 0.521 1.380 sum 8.184 -13.998 2.178 16.360 Atomic orbital electron populations 1.70145 1.08083 1.27783 1.51470 1.26030 0.95665 1.03615 0.94691 0.85395 0.78687 0.78165 0.78450 1.19869 1.21136 1.18193 1.21626 0.93765 0.91887 1.50766 0.91342 1.19024 0.94388 0.92523 0.94994 1.22000 0.94920 0.86078 1.00780 1.60017 1.29788 1.04536 1.33839 1.21393 0.94139 0.89931 1.02833 1.22053 1.02741 0.97050 0.97912 1.23741 0.79615 1.01253 0.96047 1.86888 1.41018 1.26311 1.77089 1.22996 0.88261 0.83203 0.70832 1.90606 1.27735 1.82255 1.38164 1.22464 0.96555 0.98223 0.93997 0.92856 0.99542 0.98755 0.94020 0.90162 0.89093 0.93118 0.92503 0.84639 0.83941 0.88635 0.88950 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 3 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.54 -30.31 9.11 25.60 0.23 -30.07 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.03 1.49 4.90 29.85 0.15 1.63 16 10 C 0.09 3.43 4.88 86.30 0.42 3.85 16 11 N -0.55 -18.85 4.48 -914.46 -4.10 -22.95 16 12 C 0.05 1.03 4.85 87.10 0.42 1.45 16 13 C -0.16 -2.89 5.51 29.83 0.16 -2.72 16 14 C 0.07 1.06 6.81 71.36 0.49 1.54 16 15 O -0.39 -11.18 10.65 -65.01 -0.69 -11.88 16 16 C 0.51 18.14 6.38 70.70 0.45 18.59 16 17 O -0.51 -23.04 17.88 21.93 0.39 -22.65 16 18 C 0.02 0.54 5.02 84.77 0.43 0.96 16 19 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 20 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 21 H -0.01 -0.33 6.21 -2.39 -0.01 -0.34 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.08 2.95 7.85 -2.39 -0.02 2.94 16 24 H 0.09 1.93 7.82 -2.39 -0.02 1.91 16 25 H 0.05 0.94 7.49 -2.39 -0.02 0.92 16 26 H 0.06 1.43 7.59 -2.39 -0.02 1.41 16 27 H 0.14 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.15 7.50 -2.39 -0.02 1.14 16 30 H 0.09 2.44 8.03 -2.39 -0.02 2.42 16 31 H 0.09 3.88 5.85 -2.38 -0.01 3.87 16 Total: -1.00 -74.04 257.05 2.24 -71.81 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: 1.11 Total: 2.02 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 3.21 Total: -4.43 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -3.81 Total: -80.86 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.30 Total: -34.53 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -74.04 2.24 -71.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108294541.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.839 kcal (2) G-P(sol) polarization free energy of solvation -74.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds