Wall clock time and date at job start Mon Mar 30 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00292 * 2 1 4 4 H 1.48494 * 109.47120 * 274.14040 * 3 2 1 5 5 H 1.48502 * 109.47019 * 34.14246 * 3 2 1 6 6 H 1.48500 * 109.46988 * 154.13686 * 3 2 1 7 7 C 1.38815 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00366 * 170.42280 * 7 2 1 9 9 N 1.36937 * 119.99835 * 350.42303 * 7 2 1 10 10 C 1.47431 * 125.65107 * 349.98436 * 9 7 2 11 11 C 1.55121 * 104.94467 * 203.97079 * 10 9 7 12 12 C 1.55158 * 101.48316 * 323.22161 * 11 10 9 13 13 H 1.09007 * 110.72112 * 276.82803 * 12 11 10 14 14 C 1.53002 * 110.72247 * 153.73743 * 12 11 10 15 15 C 1.52997 * 109.47516 * 177.43667 * 14 12 11 16 16 C 1.50698 * 109.47298 * 179.97438 * 15 14 12 17 17 O 1.20825 * 119.99711 * 359.97438 * 16 15 14 18 18 O 1.34228 * 120.00126 * 180.02562 * 16 15 14 19 19 C 1.47023 * 125.64735 * 169.94202 * 9 7 2 20 20 H 0.97001 * 120.00019 * 359.97438 * 1 2 3 21 21 H 1.09006 * 110.36142 * 322.92729 * 10 9 7 22 22 H 1.08992 * 110.36592 * 85.14408 * 10 9 7 23 23 H 1.09002 * 111.16372 * 205.12969 * 11 10 9 24 24 H 1.09002 * 110.93542 * 81.21055 * 11 10 9 25 25 H 1.08998 * 109.46749 * 297.44079 * 14 12 11 26 26 H 1.09008 * 109.47180 * 57.43487 * 14 12 11 27 27 H 1.09001 * 109.47270 * 300.00486 * 15 14 12 28 28 H 1.09000 * 109.46802 * 59.99578 * 15 14 12 29 29 H 0.96701 * 117.00090 * 179.97438 * 18 16 15 30 30 H 1.08996 * 109.88333 * 59.55903 * 19 9 7 31 31 H 1.08998 * 110.01553 * 298.46090 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4102 2.0969 -1.3964 5 1 1.4942 2.6258 0.7858 6 1 3.5888 1.4163 0.6108 7 6 2.0102 -1.2022 -0.0005 8 1 3.0789 -1.2087 -0.1561 9 7 1.3398 -2.3799 0.1962 10 6 -0.0654 -2.5077 0.6236 11 6 -0.1581 -3.9104 1.2794 12 6 0.7931 -4.7378 0.3749 13 1 0.2745 -5.0765 -0.5221 14 6 1.3732 -5.9266 1.1437 15 6 2.2546 -6.7574 0.2090 16 6 2.8265 -7.9280 0.9664 17 8 2.5571 -8.0817 2.1342 18 8 3.6359 -8.7993 0.3441 19 6 1.9019 -3.7263 0.0155 20 1 -0.4850 0.8401 0.0004 21 1 -0.3135 -1.7320 1.3481 22 1 -0.7307 -2.4482 -0.2377 23 1 -1.1755 -4.2990 1.2353 24 1 0.2044 -3.8845 2.3071 25 1 1.9715 -5.5622 1.9788 26 1 0.5601 -6.5461 1.5224 27 1 1.6563 -7.1218 -0.6261 28 1 3.0676 -6.1379 -0.1697 29 1 3.9785 -9.5340 0.8713 30 1 2.7570 -3.8630 0.6775 31 1 2.2094 -3.8662 -1.0208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134681338.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:12 Heat of formation + Delta-G solvation = -84.625919 kcal Electronic energy + Delta-G solvation = -14173.437850 eV Core-core repulsion = 11647.903513 eV Total energy + Delta-G solvation = -2525.534337 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.28019 -37.74454 -36.20625 -33.85772 -31.72909 -29.30400 -27.55006 -25.20831 -23.35755 -21.04708 -20.11500 -19.29255 -18.07623 -16.90153 -16.27073 -16.19382 -15.03605 -14.61447 -13.76127 -13.49128 -13.29866 -12.58135 -12.30746 -11.89729 -11.64038 -11.57730 -11.44800 -11.06571 -10.78555 -10.72906 -10.62470 -10.11679 -9.98167 -9.84515 -9.73789 -9.59383 -8.54092 -6.74958 -5.71149 -3.03163 2.18145 3.02583 3.41598 3.47263 3.49553 4.52984 4.87188 5.06581 5.14838 5.43697 5.49206 5.56033 5.65646 5.78542 5.86049 6.06288 6.24878 6.33205 6.40319 6.47555 6.62369 6.67295 6.78306 7.02039 7.56324 7.63704 7.82572 7.84117 8.31003 9.23749 9.86091 10.54532 11.42132 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.056396 B = 0.006211 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.372102 B = 4507.054677 C = 4811.794485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.075 0.925 9 N -0.604 5.604 10 C 0.172 3.828 11 C -0.141 4.141 12 C -0.101 4.101 13 H 0.073 0.927 14 C -0.095 4.095 15 C -0.114 4.114 16 C 0.478 3.522 17 O -0.518 6.518 18 O -0.521 6.521 19 C 0.139 3.861 20 H 0.252 0.748 21 H 0.067 0.933 22 H 0.025 0.975 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.406 0.594 30 H 0.022 0.978 31 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 -13.987 0.334 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.093 0.907 9 N -0.330 5.330 10 C 0.047 3.953 11 C -0.180 4.180 12 C -0.120 4.120 13 H 0.091 0.909 14 C -0.133 4.133 15 C -0.152 4.152 16 C 0.321 3.679 17 O -0.406 6.406 18 O -0.333 6.333 19 C 0.013 3.987 20 H 0.062 0.938 21 H 0.085 0.915 22 H 0.043 0.957 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.264 0.736 30 H 0.040 0.960 31 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.893 -13.465 0.409 13.779 hybrid contribution 0.696 0.362 0.246 0.822 sum 3.589 -13.103 0.655 13.601 Atomic orbital electron populations 1.69965 1.04987 1.25104 1.56554 1.24816 0.95608 0.97794 1.02240 0.86141 0.78763 0.83604 0.77491 1.21640 1.21626 1.20624 1.19028 0.91138 0.82918 1.42629 0.90708 1.44488 1.09553 0.99853 1.79141 1.21425 0.85739 0.91308 0.96779 1.23069 0.97514 0.98677 0.98697 1.22179 0.97482 0.93965 0.98343 0.90907 1.21456 0.98516 0.95788 0.97502 1.21517 1.01528 0.92369 0.99777 1.23845 0.75010 0.82901 0.86186 1.90715 1.57780 1.74077 1.18068 1.84576 1.61134 1.39242 1.48349 1.21379 0.94183 0.86024 0.97145 0.93759 0.91483 0.95673 0.92258 0.92131 0.90923 0.91356 0.87687 0.87272 0.73612 0.96019 0.96266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.37 10.68 55.49 0.59 -26.78 16 2 C -0.01 -0.23 5.40 -17.43 -0.09 -0.33 16 3 Si 0.91 22.28 29.56 -169.99 -5.03 17.25 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.49 10.24 -15.06 -0.15 -6.65 16 8 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 9 N -0.60 -15.73 3.40 -169.94 -0.58 -16.30 16 10 C 0.17 4.23 5.43 -2.41 -0.01 4.22 16 11 C -0.14 -2.66 6.55 -24.47 -0.16 -2.82 16 12 C -0.10 -1.70 2.95 -88.78 -0.26 -1.96 16 13 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.09 -1.33 3.89 -26.73 -0.10 -1.44 16 15 C -0.11 -1.33 5.68 -27.89 -0.16 -1.48 16 16 C 0.48 5.78 8.33 36.00 0.30 6.08 16 17 O -0.52 -7.92 16.74 -18.75 -0.31 -8.23 16 18 O -0.52 -4.90 13.42 -39.25 -0.53 -5.42 16 19 C 0.14 2.86 6.11 -3.06 -0.02 2.84 16 20 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 21 H 0.07 1.83 6.94 -51.93 -0.36 1.47 16 22 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.06 1.13 8.05 -51.93 -0.42 0.72 16 25 H 0.07 1.13 7.96 -51.93 -0.41 0.71 16 26 H 0.07 0.93 8.10 -51.92 -0.42 0.51 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.11 1.23 7.58 -51.93 -0.39 0.84 16 29 H 0.41 2.08 9.10 45.56 0.41 2.49 16 30 H 0.02 0.44 7.73 -51.93 -0.40 0.04 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 261.95 15.07 3.95 3.95 Total: -1.00 -33.09 261.95 -6.22 -39.31 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -3.65 Total: -2.24 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.66 Total: -1.53 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.02 Total: -43.08 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.84 Total: -13.66 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.09 -6.22 -39.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134681338.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.321 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds